C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00028K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000013503-ENSG00000111783 CGP 9606 12:106357658-106762803
GeneTranscriptPositionBiotype
ENSG00000013503 (POLR3B)
polymerase (RNA) III (DNA directed) polypeptide B 		ENST00000228347 (POLR3B-001) 106357658-106510198 protein_coding
ENST00000539066 (POLR3B-003) 106358082-106510196 protein_coding
ENST00000549195 (POLR3B-005) 106410244-106427267 processed_transcript
ENST00000549569 (POLR3B-004) 106381972-106427330 protein_coding
ENSG00000111783 (RFX4)
regulatory factor X, 4 (influences HLA class II expression) 		ENST00000229387 (RFX4-001) 106684696-106762803 protein_coding
ENST00000357881 (RFX4-003) 106601137-106761659 protein_coding
ENST00000392842 (RFX4-002) 106582907-106762802 protein_coding
ENST00000536688 (RFX4-006) 106601172-106733506 retained_intron
ENST00000536722 (RFX4-005) 106601166-106715527 nonsense_mediated_decay
ENST00000539967 (RFX4-004) 106585727-106715544 protein_coding
ENST00000546882 (RFX4-008) 106583033-106682054 nonsense_mediated_decay
ENST00000549040 (RFX4-009) 106583645-106686932 protein_coding
ENST00000551640 (RFX4-010) 106645882-106709430 protein_coding
ENST00000552773 (RFX4-007) 106639332-106683466 retained_intron
ENST00000552866 (RFX4-011) 106684696-106693159 protein_coding
ENST00000552917 (RFX4-012) 106684808-106709389 nonsense_mediated_decay
ENSG00000257711 (RP11-482D24.2)
 ENST00000547531 (RP11-482D24.2-001) 106680758-106684700 antisense
ENSG00000257918 (RP11-482D24.3)
 ENST00000552415 (RP11-482D24.3-001) 106714924-106733066 antisense
CIL_00028K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034453-ENSMUSG00000020037 CGP 10090 10:84622437-84906538
GeneTranscriptPositionBiotype
ENSMUSG00000020037 (Rfx4)
regulatory factor X, 4 (influences HLA class II expression) 		ENSMUST00000020226 (Rfx4-001) 84838148-84872502 processed_transcript
ENSMUST00000060397 (Rfx4-003) 84756062-84906144 protein_coding
ENSMUST00000095388 (Rfx4-002) 84838148-84906538 protein_coding
ENSMUST00000165868 (Rfx4-005) 84762238-84814670 processed_transcript
ENSMUST00000166696 (Rfx4-006) 84834746-84906534 protein_coding
ENSMUST00000173479 (Rfx4-004) 84762238-84814670 processed_transcript
ENSMUSG00000034453 (Polr3b)
polymerase (RNA) III (DNA directed) polypeptide B 		ENSMUST00000077175 (Polr3b-201) 84622437-84727177 protein_coding
ENSMUSG00000097309 (Gm17249)
predicted gene, 17249 		ENSMUST00000181277 (Gm17249-201) 84619332-84622578 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028K_0001ENSG00000013503ENST00000228347ENST00000539066ENST00000549195ENST00000549569ENSG00000111783ENST00000229387ENST00000357881ENST00000392842ENST00000536688ENST00000536722ENST00000539967ENST00000546882ENST00000549040ENST00000551640ENST00000552773ENST00000552866ENST00000552917ENSG00000257711ENST00000547531ENSG00000257918ENST00000552415CIL_00028K_0002ENSMUSG00000020037ENSMUST00000020226ENSMUST00000060397ENSMUST00000095388ENSMUST00000165868ENSMUST00000166696ENSMUST00000173479ENSMUSG00000034453ENSMUST00000077175ENSMUSG00000097309ENSMUST00000181277
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028K_0001ENSG00000013503ENST00000228347ENST00000539066ENSG00000111783ENST00000229387ENST00000357881ENST00000392842ENST00000536688ENST00000551640ENSG00000257711ENST00000547531ENSG00000257918ENST00000552415CIL_00028K_0002ENSMUSG00000020037ENSMUST00000020226ENSMUST00000060397ENSMUST00000095388ENSMUST00000166696ENSMUSG00000034453ENSMUST00000077175ENSMUSG00000097309ENSMUST00000181277
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013503 ENST00000228347 0.835±0.00 1.115±0.00 1.025±0.00 1.905±0.47 1.670±0.30 1.328±0.26 1.523±0.57 1.011±0.00 2.070±0.59 0.703±0.00 0.736±0.02 2.244±1.50 2.841±1.18 2.195±0.52
ENST00000539066 N/A 0.714±0.00 0.749±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000111783 ENST00000229387 0.034±0.00 N/A N/A 5.425±0.00 0.011±0.00 N/A N/A 0.042±0.00 N/A N/A N/A 0.003±0.00 N/A 63.790±40.32
ENST00000357881 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000392842 N/A N/A N/A 4.694±3.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536688 N/A 0.128±0.00 N/A N/A 0.015±0.00 N/A 0.013±0.00 0.037±0.00 0.039±0.00 N/A N/A 0.015±0.00 N/A N/A
ENST00000536722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551640 N/A N/A N/A 1.602±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257711 ENST00000547531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A
ENSG00000257918 ENST00000552415 0.055±0.00 N/A N/A N/A 0.545±0.00 N/A N/A 0.131±0.00 N/A N/A N/A 0.044±0.00 0.094±0.00 89.232±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020037 ENSMUST00000020226 0.044±0.02 N/A 0.014±0.00 N/A 0.090±0.00 N/A N/A 0.038±0.00 0.017±0.02 N/A N/A 0.118±0.08 N/A N/A
ENSMUST00000060397 N/A N/A N/A 5.677±3.42 N/A N/A N/A 0.058±0.02 N/A N/A 0.001±0.00 N/A N/A 3.339±0.00
ENSMUST00000095388 0.011±0.00 0.041±0.02 0.007±0.00 2.044±0.76 0.048±0.02 0.021±0.00 0.016±0.01 0.163±0.09 2.161±1.67 0.061±0.03 0.006±0.00 0.057±0.03 0.014±0.00 19.339±7.85
ENSMUST00000165868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166696 N/A 0.003±0.00 N/A 0.717±0.00 N/A N/A N/A 0.090±0.08 N/A N/A N/A N/A N/A 4.751±0.00
ENSMUST00000173479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034453 ENSMUST00000077175 3.232±1.11 1.660±0.47 3.286±0.60 4.098±1.39 1.909±0.71 1.664±0.58 1.445±0.46 2.034±0.46 2.644±1.18 3.252±0.26 2.353±0.22 3.230±2.24 5.868±2.16 2.427±0.28
ENSMUSG00000097309 ENSMUST00000181277 N/A N/A 1.119±0.00 N/A N/A N/A N/A N/A 0.697±0.00 N/A N/A N/A N/A N/A

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