C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC63 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000025796 SEC63 9606 - 6:107867756-107958189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369002 SEC63-001 107867756-107958189 protein_coding
  ENST00000429168 SEC63-007 107909008-107957340 protein_coding
  ENST00000446496 SEC63-010 107924818-107958111 nonsense_mediated_decay
  ENST00000459782 SEC63-004 107870765-107877400 retained_intron
  ENST00000460009 SEC63-002 107954584-107958042 processed_transcript
  ENST00000465210 SEC63-009 107880960-107883112 retained_intron
  ENST00000466419 SEC63-003 107893580-107902900 retained_intron
  ENST00000473746 SEC63-008 107872885-107883467 retained_intron
  ENST00000484803 SEC63-005 107911168-107957931 retained_intron
  ENST00000489455 SEC63-006 107906465-107909159 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369002ENST00000459782
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369002 7.188±0.00 5.500±0.00 0.596±0.00 5.325±0.00 4.057±3.33 3.950±2.87 4.180±0.00 6.138±0.00 1.715±0.61 3.738±1.37 2.468±0.00 7.808±3.92 2.431±1.02 8.967±1.19
ENST00000459782 10.191±0.00 7.627±0.00 N/A 8.624±0.00 10.469±0.00 10.150±0.00 4.796±0.00 5.709±0.00 N/A 6.745±0.00 3.543±0.00 24.916±0.00 15.134±0.00 15.955±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001889 IEA liver development
GO:0004872 TAS receptor activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005783 IEA endoplasmic reticulum
GO:0006612 TAS protein targeting to membrane
GO:0006614 IMP SRP-dependent cotranslational protein targeting to membrane
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0006807 IEA nitrogen compound metabolic process
GO:0008565 IEA protein transporter activity
GO:0010259 IEA multicellular organismal aging
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031204 IEA posttranslational protein targeting to membrane, translocation
GO:0044822 IDA poly(A) RNA binding
GO:0072001 IEA renal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017740 sec63 SEC63-like (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000019802 Sec63 SEC63-like (S. cerevisiae) protein_coding Mus_musculus

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