C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39, member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000029364 SLC39A9 9606 + 14:69398015-69462388 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000031146 SLC39A9-013 69398692-69462381 protein_coding
  ENST00000336643 SLC39A9-009 69398692-69460551 protein_coding
  ENST00000538956 SLC39A9-008 69398390-69458827 retained_intron
  ENST00000554023 SLC39A9-012 69454701-69458543 retained_intron
  ENST00000554059 SLC39A9-001 69398708-69429457 retained_intron
  ENST00000555245 SLC39A9-003 69398386-69459078 processed_transcript
  ENST00000555840 SLC39A9-005 69398738-69462381 nonsense_mediated_decay
  ENST00000556125 SLC39A9-002 69398015-69453300 processed_transcript
  ENST00000556605 SLC39A9-004 69398690-69462388 protein_coding
  ENST00000557046 SLC39A9-010 69399370-69458593 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000031146ENST00000336643ENST00000554059ENST00000556605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000031146 4.158±0.00 N/A 4.085±0.00 4.596±0.15 2.416±0.00 3.880±1.48 1.853±0.00 N/A N/A 2.606±0.31 1.828±0.00 3.602±1.09 9.536±0.00 3.948±0.00
ENST00000336643 N/A N/A 3.331±0.00 2.559±0.00 N/A 10.634±0.00 2.283±0.00 8.154±0.00 4.404±0.00 6.222±0.00 N/A 4.960±0.00 N/A N/A
ENST00000554059 N/A N/A 20.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.734±0.00 N/A N/A
ENST00000556605 N/A 7.519±0.00 14.701±0.00 9.203±0.00 8.892±0.00 12.606±0.00 N/A 10.741±0.00 10.427±0.00 N/A 2.997±0.00 10.764±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UI CIL_0006UI_0001 CGP 14:69259277-69398627
CIL_0006UM CIL_0006UM_0001 CGP 14:69380123-69462388
CIL_0001K0 CIL_0001K0_0002 CGP 14:69398015-69531551

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006829 IEA zinc ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070447 slc39a9 solute carrier family 39 (zinc transporter), member 9 protein_coding Danio_rerio
ENSMUSG00000048833 Slc39a9 solute carrier family 39 (zinc transporter), member 9 protein_coding Mus_musculus

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