C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: seryl-tRNA synthetase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000031698 SARS 9606 + 1:109213918-109238169 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000234677 SARS-001 109213918-109238120 protein_coding
  ENST00000369923 SARS-004 109213982-109238148 protein_coding
  ENST00000468588 SARS-006 109236231-109238169 processed_transcript
  ENST00000471705 SARS-005 109231158-109235431 processed_transcript
  ENST00000477544 SARS-003 109213968-109235431 processed_transcript
  ENST00000482384 SARS-002 109213932-109215153 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000234677ENST00000369923ENST00000468588ENST00000477544ENST00000482384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000234677 74.611±0.00 52.240±0.00 7.696±0.00 56.731±15.39 31.828±17.61 35.181±22.84 18.498±12.05 33.237±22.82 23.178±8.80 50.752±37.84 46.220±35.42 53.825±32.39 104.758±19.95 65.216±0.61
ENST00000369923 N/A 12.024±0.00 N/A 15.041±0.00 N/A 12.635±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468588 N/A 9.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477544 N/A N/A N/A 44.454±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482384 N/A N/A N/A N/A N/A 8.504±0.00 N/A N/A N/A N/A N/A 9.783±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 TAS RNA binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004828 TAS:IEA serine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IDA:IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006434 IEA seryl-tRNA aminoacylation
GO:0008033 TAS tRNA processing
GO:0010467 TAS gene expression
GO:0070062 IDA extracellular vesicular exosome
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008237 sars seryl-tRNA synthetase protein_coding Danio_rerio
ENSMUSG00000068739 Sars seryl-aminoacyl-tRNA synthetase protein_coding Mus_musculus

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