C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: seryl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234677 SARS-001 ENSG00000031698 9606 + 1:109213918-109238120 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000234677
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000234677 74.611±0.00 52.240±0.00 7.696±0.00 56.731±15.39 31.828±17.61 35.181±22.84 18.498±12.05 33.237±22.82 23.178±8.80 50.752±37.84 46.220±35.42 53.825±32.39 104.758±19.95 65.216±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 TAS RNA binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004828 TAS:IEA serine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IDA:IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006434 IEA seryl-tRNA aminoacylation
GO:0008033 TAS tRNA processing
GO:0010467 TAS gene expression
GO:0070062 IDA extracellular vesicular exosome
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090553 Sars-001 protein_coding Mus_musculus 0 2054
ENSMUST00000102625 Sars-002 protein_coding Mus_musculus 0 1688
ENSMUST00000132467 Sars-004 protein_coding Mus_musculus 0 808
ENSMUST00000153499 Sars-003 protein_coding Mus_musculus 0 616

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