C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA isopentenyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000043514 TRIT1 9606 - 1:39841022-39883511 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316891 TRIT1-001 39841051-39883506 protein_coding
  ENST00000372818 TRIT1-002 39841051-39883506 protein_coding
  ENST00000441669 TRIT1-003 39841051-39883491 protein_coding
  ENST00000462243 TRIT1-010 39852558-39857408 retained_intron
  ENST00000462797 TRIT1-004 39841051-39883504 nonsense_mediated_decay
  ENST00000465417 TRIT1-012 39841833-39848097 processed_transcript
  ENST00000467774 TRIT1-011 39847044-39847757 retained_intron
  ENST00000469476 TRIT1-008 39847594-39857399 nonsense_mediated_decay
  ENST00000486825 TRIT1-007 39847281-39883475 nonsense_mediated_decay
  ENST00000489945 TRIT1-006 39847220-39883496 nonsense_mediated_decay
  ENST00000491865 TRIT1-013 39841645-39883480 processed_transcript
  ENST00000492612 TRIT1-009 39844196-39883481 nonsense_mediated_decay
  ENST00000495175 TRIT1-005 39841626-39883511 nonsense_mediated_decay
  ENST00000537440 TRIT1-201 39841022-39883504 protein_coding
  ENST00000541099 TRIT1-202 39841714-39883434 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316891ENST00000372818ENST00000441669ENST00000462243ENST00000462797ENST00000465417ENST00000469476ENST00000491865ENST00000492612ENST00000495175ENST00000541099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316891 1.985±0.00 3.887±0.00 N/A 1.653±1.08 1.139±0.00 0.489±0.00 1.924±1.32 N/A 0.837±0.17 1.054±0.00 0.801±0.00 4.291±0.89 3.677±1.57 4.288±0.00
ENST00000372818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.686±0.00 N/A N/A
ENST00000441669 0.867±0.00 1.594±0.00 N/A N/A 0.768±0.00 0.639±0.07 1.426±0.00 1.254±0.35 0.343±0.00 N/A N/A 1.430±0.27 N/A 3.786±0.00
ENST00000462243 N/A N/A N/A N/A N/A N/A N/A 2.123±0.00 N/A N/A N/A N/A N/A N/A
ENST00000462797 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.209±0.00 0.108±0.00 N/A N/A N/A
ENST00000465417 N/A N/A N/A N/A N/A N/A 1.496±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000469476 N/A N/A N/A 1.488±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491865 N/A N/A N/A N/A N/A 1.266±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492612 N/A N/A N/A N/A N/A N/A N/A 1.651±0.00 N/A N/A N/A N/A N/A N/A
ENST00000495175 N/A N/A 0.905±0.00 N/A N/A 1.730±0.00 0.443±0.00 N/A N/A 1.191±0.00 N/A 3.427±0.00 3.651±0.00 N/A
ENST00000541099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.727±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JL CIL_0004JL_0002 CGP 1:39841022-39902256

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004161 IEA dimethylallyltranstransferase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0008033 IEA tRNA processing
GO:0008270 IEA zinc ion binding
GO:0009058 IEA biosynthetic process
GO:0016740 IEA transferase activity
GO:0046872 IEA metal ion binding
GO:0052381 TAS tRNA dimethylallyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032876 trit1 tRNA isopentenyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000028653 Trit1 tRNA isopentenyltransferase 1 protein_coding Mus_musculus

Loading