C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YTH domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000047188 YTHDC2 9606 + 5:113513683-113595285 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000161863 YTHDC2-001 113513683-113595284 protein_coding
  ENST00000503857 YTHDC2-003 113513694-113561196 nonsense_mediated_decay
  ENST00000506333 YTHDC2-008 113565719-113579666 retained_intron
  ENST00000507567 YTHDC2-006 113591158-113592601 retained_intron
  ENST00000512600 YTHDC2-005 113581266-113595285 retained_intron
  ENST00000514720 YTHDC2-007 113514146-113526703 protein_coding
  ENST00000515883 YTHDC2-002 113513709-113556360 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000161863ENST00000503857ENST00000512600ENST00000515883
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000161863 2.987±0.00 5.669±0.00 2.849±1.25 2.113±1.18 2.324±0.94 1.337±0.93 1.926±0.52 1.768±0.31 1.987±0.74 1.144±0.15 2.280±1.32 1.400±0.33 5.547±0.00
ENST00000503857 N/A N/A 2.740±0.00 1.790±0.00 N/A N/A N/A 2.281±0.00 2.692±0.00 N/A 2.261±0.00 N/A N/A
ENST00000512600 N/A N/A 0.446±0.00 0.605±0.00 N/A N/A N/A N/A 0.923±0.00 N/A 0.391±0.00 N/A N/A
ENST00000515883 N/A N/A N/A 1.231±0.00 N/A 1.412±0.00 N/A 1.589±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UP CIL_0004UP_0001 CGP 5:113513683-114496640

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005783 IDA endoplasmic reticulum
GO:0006200 IDA ATP catabolic process
GO:0008186 IDA RNA-dependent ATPase activity
GO:0034612 IDA response to tumor necrosis factor
GO:0044822 IDA poly(A) RNA binding
GO:0044829 IMP positive regulation by host of viral genome replication
GO:0070063 IPI RNA polymerase binding
GO:0070555 IDA response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000034653 Ythdc2 YTH domain containing 2 protein_coding Mus_musculus

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