C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004UP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000047188-ENSG00000080709 CGP 9606 5:113513683-114496640
GeneTranscriptPositionBiotype
ENSG00000047188 (YTHDC2)
YTH domain containing 2 		ENST00000161863 (YTHDC2-001) 113513683-113595284 protein_coding
ENST00000503857 (YTHDC2-003) 113513694-113561196 nonsense_mediated_decay
ENST00000506333 (YTHDC2-008) 113565719-113579666 retained_intron
ENST00000507567 (YTHDC2-006) 113591158-113592601 retained_intron
ENST00000512600 (YTHDC2-005) 113581266-113595285 retained_intron
ENST00000514720 (YTHDC2-007) 113514146-113526703 protein_coding
ENST00000515883 (YTHDC2-002) 113513709-113556360 protein_coding
ENSG00000080709 (KCNN2)
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 		ENST00000264773 (KCNN2-201) 114362319-114496497 protein_coding
ENST00000503706 (KCNN2-002) 114433530-114496516 protein_coding
ENST00000505491 (KCNN2-004) 114433578-114493442 nonsense_mediated_decay
ENST00000506812 (KCNN2-003) 114486671-114496058 retained_intron
ENST00000507750 (KCNN2-005) 114363107-114495946 processed_transcript
ENST00000512097 (KCNN2-001) 114360945-114496640 protein_coding
ENST00000610748 (KCNN2-202) 114362319-114496495 protein_coding
ENSG00000222706 (RN7SKP89)
RNA, 7SK small nuclear pseudogene 89 		ENST00000410774 (RN7SKP89-201) 114253513-114253754 misc_RNA
ENSG00000251628 (RP11-371M22.1)
 ENST00000512927 (RP11-371M22.1-001) 114056006-114057174 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004UP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034653-ENSMUSG00000054477 CGP 10090 18:44828665-45686024
GeneTranscriptPositionBiotype
ENSMUSG00000034653 (Ythdc2)
YTH domain containing 2 		ENSMUST00000037763 (Ythdc2-201) 44828665-44889720 protein_coding
ENSMUSG00000054477 (Kcnn2)
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 		ENSMUST00000066890 (Kcnn2-201) 45269005-45686024 protein_coding
ENSMUST00000167895 (Kcnn2-002) 45560154-45675362 processed_transcript
ENSMUST00000169783 (Kcnn2-202) 45560154-45685882 protein_coding
ENSMUST00000183623 (Kcnn2-005) 45268860-45289824 processed_transcript
ENSMUST00000183850 (Kcnn2-001) 45269005-45685883 protein_coding
ENSMUST00000183897 (Kcnn2-004) 45559811-45593065 retained_intron
ENSMUST00000184101 (Kcnn2-003) 45559469-45671249 retained_intron
ENSMUSG00000073569 (Gm10540)
predicted gene 10540 		ENSMUST00000097581 (Gm10540-201) 45285833-45286108 processed_pseudogene
ENSMUSG00000098284 (A330093E20Rik)
RIKEN cDNA A330093E20 gene 		ENSMUST00000184346 (A330093E20Rik-002) 45685130-45854544 antisense
ENSMUST00000184994 (A330093E20Rik-001) 45683487-45896509 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004UP_0001ENSG00000047188ENST00000161863ENST00000503857ENST00000506333ENST00000507567ENST00000512600ENST00000514720ENST00000515883ENSG00000080709ENST00000264773ENST00000503706ENST00000505491ENST00000506812ENST00000507750ENST00000512097ENST00000610748ENSG00000222706ENST00000410774ENSG00000251628ENST00000512927CIL_0004UP_0002ENSMUSG00000034653ENSMUST00000037763ENSMUSG00000054477ENSMUST00000066890ENSMUST00000167895ENSMUST00000169783ENSMUST00000183623ENSMUST00000183850ENSMUST00000183897ENSMUST00000184101ENSMUSG00000073569ENSMUST00000097581ENSMUSG00000098284ENSMUST00000184346ENSMUST00000184994
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004UP_0001ENSG00000047188ENST00000161863ENST00000503857ENST00000512600ENST00000515883ENSG00000080709ENST00000264773ENST00000503706ENST00000505491ENST00000507750ENST00000512097ENST00000610748ENSG00000222706ENST00000410774ENSG00000251628ENST00000512927CIL_0004UP_0002ENSMUSG00000034653ENSMUST00000037763ENSMUSG00000054477ENSMUST00000066890ENSMUST00000167895ENSMUST00000169783ENSMUST00000183623ENSMUST00000183850ENSMUST00000183897ENSMUST00000184101ENSMUSG00000073569ENSMUST00000097581ENSMUSG00000098284ENSMUST00000184346ENSMUST00000184994
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000047188 ENST00000161863 2.987±0.00 5.669±0.00 N/A 2.849±1.25 2.113±1.18 2.324±0.94 1.337±0.93 1.926±0.52 1.768±0.31 1.987±0.74 1.144±0.15 2.280±1.32 1.400±0.33 5.547±0.00
ENST00000503857 N/A N/A N/A 2.740±0.00 1.790±0.00 N/A N/A N/A 2.281±0.00 2.692±0.00 N/A 2.261±0.00 N/A N/A
ENST00000506333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512600 N/A N/A N/A 0.446±0.00 0.605±0.00 N/A N/A N/A N/A 0.923±0.00 N/A 0.391±0.00 N/A N/A
ENST00000514720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515883 N/A N/A N/A N/A 1.231±0.00 N/A 1.412±0.00 N/A 1.589±0.00 N/A N/A N/A N/A N/A
ENSG00000080709 ENST00000264773 N/A 0.313±0.00 0.172±0.00 2.129±0.73 0.162±0.04 0.805±0.41 1.498±1.03 3.378±3.09 2.764±0.89 0.306±0.00 0.162±0.04 0.098±0.06 N/A 0.641±0.32
ENST00000503706 N/A 0.471±0.00 N/A 1.259±0.00 0.140±0.06 N/A N/A 0.195±0.00 N/A N/A N/A 0.184±0.16 0.135±0.00 0.950±0.07
ENST00000505491 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 0.074±0.00 N/A
ENST00000512097 0.102±0.00 N/A N/A N/A N/A N/A 1.386±0.00 0.068±0.00 N/A N/A N/A 0.169±0.00 0.064±0.00 0.205±0.00
ENST00000610748 N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A 0.644±0.00 0.169±0.00 N/A 0.069±0.00 N/A N/A
ENSG00000222706 ENST00000410774 N/A N/A N/A N/A N/A 0.714±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251628 ENST00000512927 N/A N/A N/A 0.136±0.00 N/A 0.216±0.00 3.309±0.00 N/A N/A N/A N/A 0.179±0.00 0.150±0.00 0.242±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034653 ENSMUST00000037763 0.898±0.09 0.733±0.40 1.634±0.03 2.232±0.63 0.999±0.15 1.081±0.21 0.839±0.09 0.568±0.11 1.367±0.96 0.712±0.41 0.782±0.17 1.262±0.41 0.729±0.32 2.263±0.43
ENSMUSG00000054477 ENSMUST00000066890 N/A N/A N/A N/A 0.044±0.00 N/A N/A 0.177±0.00 0.041±0.00 N/A 0.191±0.03 N/A N/A 0.034±0.00
ENSMUST00000167895 0.083±0.00 N/A N/A N/A 0.071±0.00 N/A 1.992±0.41 0.431±0.17 2.152±1.94 N/A 0.440±0.07 0.437±0.00 0.076±0.05 0.175±0.05
ENSMUST00000169783 N/A N/A N/A 15.999±0.00 0.105±0.00 N/A N/A N/A 0.020±0.00 N/A 0.302±0.10 0.717±0.07 0.099±0.03 0.136±0.00
ENSMUST00000183623 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A 0.021±0.01 0.018±0.00
ENSMUST00000183850 0.157±0.10 N/A 2.214±0.57 1.830±0.53 N/A N/A 0.869±0.21 0.182±0.05 0.379±0.44 N/A 0.387±0.14 0.251±0.03 0.042±0.03 0.020±0.00
ENSMUST00000183897 N/A N/A N/A N/A 0.057±0.03 N/A N/A N/A 3.745±0.63 N/A N/A N/A N/A N/A
ENSMUST00000184101 0.053±0.00 68.778±4.66 N/A N/A 0.094±0.00 N/A N/A 0.292±0.11 1.652±1.12 0.195±0.07 N/A 1.057±0.45 0.060±0.00 0.097±0.00
ENSMUSG00000073569 ENSMUST00000097581 N/A N/A 0.316±0.17 0.426±0.22 N/A N/A 0.571±0.16 N/A 0.079±0.02 N/A N/A 1.344±0.65 2.648±1.43 0.224±0.00
ENSMUSG00000098284 ENSMUST00000184346 N/A N/A N/A 17.990±0.00 N/A N/A N/A 0.663±0.13 0.036±0.00 N/A 0.992±0.05 0.768±0.00 0.239±0.13 0.205±0.04
ENSMUST00000184994 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.121±0.00

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