C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil and C2 domain containing 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048342 CC2D2A 9606 + 4:15469865-15601557 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389652 CC2D2A-010 15479223-15601546 protein_coding
  ENST00000424120 CC2D2A-201 15469865-15601557 protein_coding
  ENST00000438599 CC2D2A-202 15469865-15482262 protein_coding
  ENST00000503292 CC2D2A-002 15469930-15601557 protein_coding
  ENST00000503658 CC2D2A-006 15470013-15481376 protein_coding
  ENST00000506643 CC2D2A-012 15536985-15601552 nonsense_mediated_decay
  ENST00000507954 CC2D2A-013 15469903-15481290 protein_coding
  ENST00000510220 CC2D2A-017 15527619-15533453 retained_intron
  ENST00000511544 CC2D2A-004 15469891-15482317 protein_coding
  ENST00000512202 CC2D2A-014 15550738-15557373 retained_intron
  ENST00000512702 CC2D2A-003 15469891-15537076 protein_coding
  ENST00000513035 CC2D2A-015 15595872-15597465 retained_intron
  ENST00000513811 CC2D2A-008 15469896-15543961 processed_transcript
  ENST00000514039 CC2D2A-016 15589627-15601371 processed_transcript
  ENST00000514450 CC2D2A-009 15469921-15511675 retained_intron
  ENST00000515124 CC2D2A-005 15469912-15482259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389652ENST00000424120ENST00000503292ENST00000506643ENST00000511544ENST00000512202ENST00000512702ENST00000513811ENST00000514450ENST00000515124
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389652 0.504±0.00 0.944±0.00 N/A 0.712±0.00 0.777±0.19 0.808±0.00 N/A 0.599±0.00 1.773±0.00 N/A N/A 0.796±0.30 0.905±0.00 1.100±0.06
ENST00000424120 0.149±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.655±0.00 N/A 0.395±0.00 1.228±0.00 0.393±0.00
ENST00000503292 N/A N/A 0.426±0.00 0.539±0.00 0.479±0.00 1.045±0.65 0.381±0.00 0.820±0.00 N/A 0.635±0.00 N/A 2.292±0.00 N/A 0.535±0.00
ENST00000506643 0.229±0.00 1.907±0.00 1.024±0.00 0.365±0.00 1.944±0.00 0.563±0.00 0.393±0.07 N/A 0.893±0.62 1.082±0.21 0.083±0.00 1.109±0.34 N/A 1.546±0.00
ENST00000511544 N/A N/A N/A 0.533±0.00 N/A 0.663±0.00 N/A N/A 0.145±0.00 N/A N/A N/A N/A N/A
ENST00000512202 N/A N/A N/A N/A N/A 3.011±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512702 N/A N/A 2.010±0.00 0.687±0.02 0.631±0.00 N/A 0.522±0.00 N/A 1.995±0.00 2.453±0.00 N/A 0.552±0.00 N/A N/A
ENST00000513811 N/A N/A 0.767±0.00 0.258±0.00 0.739±0.00 0.939±0.00 0.456±0.00 N/A 1.193±1.07 N/A 0.370±0.00 0.631±0.00 0.701±0.00 N/A
ENST00000514450 N/A N/A N/A N/A N/A 3.315±0.00 N/A N/A N/A N/A 0.383±0.00 N/A N/A N/A
ENST00000515124 0.768±0.00 N/A 1.025±0.00 1.452±0.00 1.646±0.00 4.243±0.00 0.686±0.31 2.436±0.00 0.162±0.00 2.145±0.00 0.167±0.00 1.818±0.79 3.137±0.56 1.545±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DZ CIL_0003DZ_0002 CGP 4:15339818-15601557
CIL_00026J CIL_00026J_0001 CGP 4:15469865-15681679

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007224 ISS smoothened signaling pathway
GO:0035869 ISS ciliary transition zone
GO:0036038 ISS TCTN-B9D complex
GO:0042384 ISS cilium assembly
GO:0060271 ISS cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090971 C23H10orf131 coiled-coil and C2 domain containing 2A protein_coding Danio_rerio
ENSMUSG00000039765 Cc2d2a coiled-coil and C2 domain containing 2A protein_coding Mus_musculus

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