C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil and C2 domain containing 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039765 Cc2d2a 10090 + 5:43662379-43740972 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048150 Cc2d2a-001 43662379-43740972 protein_coding
  ENSMUST00000125866 Cc2d2a-005 43689031-43740972 protein_coding
  ENSMUST00000127355 Cc2d2a-003 43696582-43717017 retained_intron
  ENSMUST00000142303 Cc2d2a-004 43672289-43689101 processed_transcript
  ENSMUST00000156034 Cc2d2a-002 43672289-43703929 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048150ENSMUST00000125866ENSMUST00000127355ENSMUST00000142303ENSMUST00000156034
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048150 0.708±0.08 0.580±0.13 N/A 1.031±0.00 0.653±0.11 0.434±0.00 N/A 0.572±0.01 0.159±0.00 N/A 0.391±0.08 1.480±0.76 0.214±0.06 0.143±0.00
ENSMUST00000125866 1.506±0.78 1.433±0.44 3.436±0.67 1.827±0.07 1.288±0.81 0.698±0.09 1.160±0.52 1.002±0.32 0.661±0.49 1.855±0.84 0.603±0.15 4.708±4.07 0.612±0.40 0.259±0.11
ENSMUST00000127355 N/A 0.515±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142303 N/A 1.221±0.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.484±0.00 N/A
ENSMUST00000156034 1.271±0.00 N/A N/A 2.616±0.00 0.987±0.00 0.918±0.01 N/A N/A N/A N/A N/A 21.572±0.00 0.605±0.23 0.698±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DZ CIL_0003DZ_0003 CGP 5:43515569-43740972
CIL_00026J CIL_00026J_0002 CGP 5:43662379-43821639

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007224 IMP smoothened signaling pathway
GO:0035869 IDA ciliary transition zone
GO:0036038 IDA TCTN-B9D complex
GO:0042384 IMP cilium assembly
GO:0060271 IMP cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090971 C23H10orf131 coiled-coil and C2 domain containing 2A protein_coding Danio_rerio
ENSG00000048342 CC2D2A coiled-coil and C2 domain containing 2A protein_coding Homo_sapiens

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