C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048471 SNX29 9606 + 16:11976737-12574289 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000562510 SNX29-007 12356253-12443365 protein_coding
  ENST00000563308 SNX29-006 12052198-12135737 protein_coding
  ENST00000564111 SNX29-001 11976745-12053284 retained_intron
  ENST00000564791 SNX29-009 12129697-12527397 protein_coding
  ENST00000566228 SNX29-005 11976738-12574289 protein_coding
  ENST00000568359 SNX29-003 12038710-12051868 processed_transcript
  ENST00000568949 SNX29-002 12000325-12027733 retained_intron
  ENST00000569801 SNX29-004 11976737-12042997 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000563308ENST00000566228
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000563308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.788±0.00 N/A N/A N/A
ENST00000566228 6.190±0.00 4.698±0.00 4.782±0.00 3.116±1.86 3.032±1.18 2.207±0.90 1.287±0.73 6.131±5.62 1.466±0.77 2.238±0.18 2.076±0.00 2.845±1.66 3.788±0.46 3.366±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LT CIL_0001LT_0001 CGP 16:11965107-12574289
CIL_0007DY CIL_0007DY_0001 CGP 16:11976737-12804017

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003777 IEA microtubule motor activity
GO:0005871 IEA kinesin complex
GO:0007018 IEA microtubule-based movement
GO:0008152 IEA metabolic process
GO:0035091 IEA phosphatidylinositol binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077317 snx29 sorting nexin 29 protein_coding Danio_rerio
ENSMUSG00000071669 Snx29 sorting nexin 29 protein_coding Mus_musculus

Loading