C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001LT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000048462-ENSG00000048471 CGP 9606 16:11965107-12574289
GeneTranscriptPositionBiotype
ENSG00000048462 (TNFRSF17)
tumor necrosis factor receptor superfamily, member 17 		ENST00000053243 (TNFRSF17-001) 11965107-11968068 protein_coding
ENST00000396495 (TNFRSF17-003) 11965213-11967995 protein_coding
ENST00000562385 (TNFRSF17-002) 11965350-11967704 protein_coding
ENSG00000175604 (RP11-276H1.3)
 ENST00000312019 (RP11-276H1.3-001) 12086746-12090302 antisense
ENSG00000234719 (RP11-166B2.1)
Putative NPIP-like protein LOC729978 		ENST00000356023 (RP11-166B2.1-004) 11928981-11929637 retained_intron
ENST00000399147 (RP11-166B2.1-001) 11927373-11942045 protein_coding
ENST00000532936 (RP11-166B2.1-002) 11933623-11976643 processed_transcript
ENST00000538896 (RP11-166B2.1-003) 11930513-11976634 protein_coding
ENST00000540412 (RP11-166B2.1-005) 11927595-11929343 retained_intron
ENST00000547494 (RP11-166B2.1-007) 11927595-11942045 protein_coding
ENST00000620285 (RP11-166B2.1-201) 11928624-11941297 protein_coding
ENSG00000238685 (ACA64)
Small nucleolar RNA ACA64 		ENST00000459171 (ACA64.1-201) 12297197-12297323 snoRNA
ENSG00000241641 (RPS23P6)
ribosomal protein S23 pseudogene 6 		ENST00000466136 (RPS23P6-001) 12081237-12081902 processed_pseudogene
ENSG00000259876 (CTD-3037G24.4)
 ENST00000563116 (CTD-3037G24.4-001) 12556353-12557694 antisense
ENSG00000259899 (CTD-3037G24.3)
 ENST00000564505 (CTD-3037G24.3-001) 12560756-12611044 antisense
ENSG00000260224 (UBL5P4)
ubiquitin-like 5 pseudogene 4 		ENST00000562584 (UBL5P4-001) 11968508-11968743 processed_pseudogene
ENSG00000260488 (RP11-166B2.7)
 ENST00000570197 (RP11-166B2.7-001) 11976851-11977850 antisense
ENSG00000260601 (RP11-552C15.1)
 ENST00000565359 (RP11-552C15.1-001) 12545482-12546684 sense_intronic
ENSG00000260723 (RP11-165M1.2)
 ENST00000561528 (RP11-165M1.2-001) 12372823-12373897 sense_intronic
ENST00000564577 (RP11-165M1.2-002) 12372812-12373899 sense_intronic
ENSG00000261293 (RP11-276H1.2)
 ENST00000566957 (RP11-276H1.2-001) 12093627-12095307 antisense
ENSG00000261394 (RP11-165M1.3)
 ENST00000569490 (RP11-165M1.3-001) 12366982-12372582 antisense
ENSG00000278979 (RP11-165M1.1)
 ENST00000623077 (RP11-165M1.1-001) 12374355-12376032 TEC
CIL_0001LT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022496-ENSMUSG00000071669 CGP 10090 16:11313812-11755472
GeneTranscriptPositionBiotype
ENSMUSG00000022496 (Tnfrsf17)
tumor necrosis factor receptor superfamily, member 17 		ENSMUST00000023140 (Tnfrsf17-001) 11313812-11320074 protein_coding
ENSMUSG00000071669 (Snx29)
sorting nexin 29 		ENSMUST00000096273 (Snx29-001) 11405648-11755472 protein_coding
ENSMUST00000115814 (Snx29-201) 11322972-11403836 protein_coding
ENSMUST00000122168 (Snx29-002) 11406657-11661555 protein_coding
ENSMUST00000134941 (Snx29-003) 11447308-11661496 retained_intron
ENSMUST00000150993 (Snx29-005) 11420708-11679349 protein_coding
ENSMUST00000151478 (Snx29-004) 11445185-11631727 retained_intron
ENSMUST00000180792 (Snx29-006) 11322908-11755472 protein_coding
ENSMUSG00000082653 (Gm15897)
predicted gene 15897 		ENSMUST00000117770 (Gm15897-001) 11494821-11496306 processed_pseudogene
ENSMUSG00000085732 (Gm4279)
predicted gene 4279 		ENSMUST00000154314 (Gm4279-001) 11688169-11691857 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LT_0001ENSG00000048462ENST00000053243ENST00000396495ENST00000562385ENSG00000175604ENST00000312019ENSG00000234719ENST00000356023ENST00000399147ENST00000532936ENST00000538896ENST00000540412ENST00000547494ENST00000620285ENSG00000238685ENST00000459171ENSG00000241641ENST00000466136ENSG00000259876ENST00000563116ENSG00000259899ENST00000564505ENSG00000260224ENST00000562584ENSG00000260488ENST00000570197ENSG00000260601ENST00000565359ENSG00000260723ENST00000561528ENST00000564577ENSG00000261293ENST00000566957ENSG00000261394ENST00000569490ENSG00000278979ENST00000623077CIL_0001LT_0002ENSMUSG00000022496ENSMUST00000023140ENSMUSG00000071669ENSMUST00000096273ENSMUST00000115814ENSMUST00000122168ENSMUST00000134941ENSMUST00000150993ENSMUST00000151478ENSMUST00000180792ENSMUSG00000082653ENSMUST00000117770ENSMUSG00000085732ENSMUST00000154314
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LT_0001ENSG00000048462ENST00000053243ENST00000396495ENST00000562385ENSG00000175604ENST00000312019ENSG00000234719ENST00000356023ENST00000399147ENST00000532936ENST00000538896ENST00000540412ENST00000547494ENST00000620285ENSG00000238685ENST00000459171ENSG00000241641ENST00000466136ENSG00000259876ENST00000563116ENSG00000259899ENST00000564505ENSG00000260224ENST00000562584ENSG00000260488ENST00000570197ENSG00000260601ENST00000565359ENSG00000260723ENST00000561528ENST00000564577ENSG00000261293ENST00000566957ENSG00000261394ENST00000569490ENSG00000278979ENST00000623077CIL_0001LT_0002ENSMUSG00000022496ENSMUST00000023140ENSMUSG00000071669ENSMUST00000096273ENSMUST00000122168ENSMUST00000134941ENSMUST00000150993ENSMUST00000151478ENSMUST00000180792ENSMUSG00000082653ENSMUST00000117770ENSMUSG00000085732ENSMUST00000154314
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000048462 ENST00000053243 0.155±0.00 6.646±0.00 N/A N/A 1.172±0.41 1.442±1.38 0.034±0.00 N/A N/A 0.272±0.00 N/A 0.558±0.33 0.078±0.00 0.972±0.61
ENST00000396495 N/A 2.589±0.00 1.896±0.00 1.085±0.00 0.512±0.24 0.210±0.00 N/A 0.119±0.00 N/A N/A N/A 0.167±0.05 0.051±0.00 0.291±0.00
ENST00000562385 N/A N/A N/A 0.179±0.00 0.259±0.00 N/A 0.028±0.00 0.142±0.00 N/A 0.251±0.00 N/A 0.156±0.00 0.020±0.00 N/A
ENSG00000175604 ENST00000312019 0.421±0.00 0.365±0.00 0.572±0.00 0.175±0.00 0.324±0.00 0.151±0.09 0.053±0.02 0.411±0.20 0.024±0.01 0.016±0.00 0.030±0.00 0.244±0.00 0.072±0.00 0.271±0.04
ENSG00000234719 ENST00000356023 0.105±0.00 0.668±0.00 N/A N/A 0.830±0.67 0.737±0.00 0.140±0.00 N/A 0.681±0.00 0.464±0.15 0.023±0.00 0.986±0.15 0.267±0.00 1.990±1.52
ENST00000399147 0.177±0.00 0.202±0.00 0.130±0.00 0.249±0.06 0.340±0.00 0.114±0.00 0.037±0.00 0.384±0.00 0.024±0.00 0.268±0.00 N/A 0.403±0.22 0.172±0.09 1.043±0.60
ENST00000532936 0.556±0.00 0.479±0.00 N/A 0.247±0.00 0.225±0.00 0.606±0.00 0.028±0.00 N/A 0.081±0.00 0.070±0.00 N/A 1.150±0.25 0.527±0.16 1.050±0.00
ENST00000538896 N/A N/A N/A N/A 0.284±0.00 0.265±0.00 N/A N/A 0.175±0.00 N/A N/A 0.148±0.00 0.255±0.00 N/A
ENST00000540412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.957±0.00 N/A N/A
ENST00000547494 N/A N/A 0.522±0.00 N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A
ENST00000620285 N/A N/A 0.243±0.00 N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A 0.169±0.12 0.142±0.06 0.707±0.39
ENSG00000238685 ENST00000459171 N/A N/A 35.440±0.00 7.963±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241641 ENST00000466136 0.405±0.00 0.464±0.00 2.045±0.00 0.164±0.00 0.958±0.00 0.542±0.00 N/A 0.808±0.00 1.179±0.00 1.352±0.00 0.033±0.00 0.261±0.14 N/A 0.163±0.07
ENSG00000259876 ENST00000563116 N/A 0.226±0.00 N/A 0.092±0.00 0.116±0.00 N/A 0.025±0.00 0.367±0.00 N/A 0.207±0.00 N/A 0.111±0.00 N/A 0.189±0.14
ENSG00000259899 ENST00000564505 N/A 0.061±0.00 N/A N/A 0.041±0.00 0.454±0.00 N/A N/A N/A 0.071±0.00 N/A 0.614±0.00 N/A 0.179±0.00
ENSG00000260224 ENST00000562584 N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 0.240±0.00
ENSG00000260488 ENST00000570197 0.091±0.00 0.034±0.00 1.970±0.00 0.074±0.00 0.072±0.00 N/A N/A 0.214±0.00 N/A N/A 0.078±0.00 0.128±0.09 0.068±0.04 0.084±0.00
ENSG00000260601 ENST00000565359 N/A N/A 0.917±0.00 N/A 0.909±0.00 N/A N/A N/A 0.108±0.00 0.062±0.00 N/A N/A N/A 0.079±0.03
ENSG00000260723 ENST00000561528 N/A 0.274±0.00 N/A 0.153±0.00 0.300±0.00 0.870±0.00 N/A N/A N/A 0.362±0.00 N/A N/A N/A 0.278±0.00
ENST00000564577 N/A N/A N/A N/A N/A N/A N/A N/A 2.154±0.00 N/A N/A N/A N/A 1.676±0.44
ENSG00000261293 ENST00000566957 0.072±0.00 0.074±0.00 N/A 0.074±0.00 0.391±0.37 N/A 0.022±0.00 0.170±0.00 N/A 0.754±0.00 N/A 0.051±0.00 N/A 0.365±0.00
ENSG00000261394 ENST00000569490 0.030±0.00 0.065±0.00 0.650±0.00 0.069±0.00 0.236±0.00 N/A N/A 0.657±0.00 N/A N/A N/A 0.176±0.00 N/A 4.285±0.75
ENSG00000278979 ENST00000623077 0.123±0.00 0.356±0.00 0.574±0.00 0.107±0.00 0.135±0.02 0.038±0.01 0.042±0.00 0.225±0.00 0.016±0.00 0.083±0.04 0.231±0.00 0.056±0.03 0.046±0.00 0.069±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022496 ENSMUST00000023140 0.965±0.47 0.210±0.03 0.792±0.18 0.146±0.08 1.217±0.50 2.564±0.69 0.164±0.13 0.150±0.06 0.089±0.03 0.221±0.05 0.135±0.08 0.345±0.17 0.063±0.03 0.100±0.04
ENSMUSG00000071669 ENSMUST00000096273 N/A N/A N/A N/A N/A N/A N/A N/A 0.930±0.00 N/A N/A N/A N/A 1.980±0.56
ENSMUST00000115814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000122168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.714±0.00
ENSMUST00000134941 N/A N/A N/A N/A 1.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150993 N/A N/A 0.991±0.00 N/A N/A N/A 0.221±0.00 N/A N/A N/A 0.136±0.05 N/A N/A N/A
ENSMUST00000151478 N/A N/A N/A 4.222±0.00 N/A N/A N/A N/A N/A N/A 1.805±0.00 5.208±0.00 3.597±2.15 N/A
ENSMUST00000180792 1.150±0.00 1.319±0.14 3.997±0.00 N/A 2.422±0.58 N/A N/A N/A 0.669±0.20 2.823±0.00 0.583±0.26 1.852±0.00 1.382±0.71 0.854±0.00
ENSMUSG00000082653 ENSMUST00000117770 0.047±0.01 0.058±0.02 0.057±0.00 0.057±0.00 0.054±0.03 0.062±0.03 0.018±0.00 0.262±0.12 0.035±0.04 0.050±0.02 0.032±0.00 0.084±0.02 0.039±0.00 0.050±0.01
ENSMUSG00000085732 ENSMUST00000154314 0.108±0.04 0.062±0.02 0.164±0.00 0.061±0.01 0.251±0.07 0.093±0.06 0.058±0.03 0.512±0.31 0.038±0.01 0.190±0.06 0.010±0.00 0.147±0.09 0.021±0.00 0.038±0.03

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