C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear factor, erythroid 2-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000050344 NFE2L3 9606 + 7:26152240-26187125 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000056233 NFE2L3-001 26152240-26187125 protein_coding
  ENST00000606261 NFE2L3-002 26184060-26186317 retained_intron
  ENST00000607375 NFE2L3-003 26178003-26183874 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000056233ENST00000606261ENST00000607375
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000056233 1.649±0.00 1.852±0.00 0.231±0.14 1.990±1.12 0.475±0.00 0.661±0.00 1.590±0.00 0.167±0.00 2.541±0.55 0.290±0.00 8.851±9.35 36.761±25.65 1.056±0.07
ENST00000606261 1.269±0.00 2.857±0.00 0.358±0.05 2.130±1.31 1.064±0.00 0.610±0.00 0.995±0.71 0.512±0.00 4.382±0.00 0.161±0.00 9.230±11.15 34.809±27.42 0.813±0.44
ENST00000607375 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.546±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0001 VISTA 7:25556589-26157582
CIL_0007VE CIL_0007VE_0001 VISTA 7:25579380-26182921
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0002CP CIL_0002CP_0001 CGP 7:26152240-26201529

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019810 nfe2l3 nuclear factor (erythroid-derived 2)-like 3 protein_coding Danio_rerio
ENSMUSG00000029832 Nfe2l3 nuclear factor, erythroid derived 2, like 3 protein_coding Mus_musculus

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