C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008Q3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm410 VISTA 9606 7:25714231-26318034
GeneTranscriptPositionBiotype
ENSG00000050344 (NFE2L3)
nuclear factor, erythroid 2-like 3 		ENST00000056233 (NFE2L3-001) 26152240-26187125 protein_coding
ENST00000606261 (NFE2L3-002) 26184060-26186317 retained_intron
ENST00000607375 (NFE2L3-003) 26178003-26183874 protein_coding
ENSG00000086300 (SNX10)
sorting nexin 10 		ENST00000338523 (SNX10-002) 26291923-26374325 protein_coding
ENST00000396376 (SNX10-001) 26293054-26374329 protein_coding
ENST00000409367 (SNX10-007) 26354057-26372608 protein_coding
ENST00000409838 (SNX10-004) 26364325-26372944 protein_coding
ENST00000412416 (SNX10-006) 26292011-26361031 protein_coding
ENST00000416246 (SNX10-005) 26291921-26372022 protein_coding
ENST00000446848 (SNX10-201) 26291895-26374317 protein_coding
ENST00000462993 (SNX10-003) 26370388-26372746 processed_transcript
ENST00000619420 (SNX10-202) 26360454-26374327 protein_coding
ENSG00000122566 (HNRNPA2B1)
heterogeneous nuclear ribonucleoprotein A2/B1 		ENST00000354667 (HNRNPA2B1-001) 26189927-26200746 protein_coding
ENST00000356674 (HNRNPA2B1-002) 26191844-26200746 protein_coding
ENST00000360787 (HNRNPA2B1-006) 26190125-26200746 nonsense_mediated_decay
ENST00000463181 (HNRNPA2B1-003) 26190304-26200784 retained_intron
ENST00000476233 (HNRNPA2B1-007) 26189927-26191678 processed_transcript
ENST00000490912 (HNRNPA2B1-004) 26191849-26201529 retained_intron
ENST00000495810 (HNRNPA2B1-008) 26195712-26196907 retained_intron
ENST00000618183 (HNRNPA2B1-201) 26189936-26200793 protein_coding
ENSG00000223561 (AC003090.1)
 ENST00000423689 (AC003090.1-002) 25657071-25662941 lincRNA
ENST00000446840 (AC003090.1-001) 25593351-25663053 lincRNA
ENST00000456777 (AC003090.1-005) 25594533-25750994 lincRNA
ENSG00000232383 (AC010677.5)
 ENST00000441690 (AC010677.5-001) 26276195-26276606 processed_pseudogene
ENSG00000270933 (CTD-2227E11.1)
 ENST00000602992 (CTD-2227E11.1-001) 25948657-25949403 lincRNA
ENSG00000273237 (CTB-119C2.1)
 ENST00000608362 (CTB-119C2.1-001) 26173533-26174945 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008Q3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm410 VISTA 10090 6:51033774-51634476
GeneTranscriptPositionBiotype
ENSMUSG00000004980 (Hnrnpa2b1)
heterogeneous nuclear ribonucleoprotein A2/B1 		ENSMUST00000069949 (Hnrnpa2b1-201) 51460932-51469894 protein_coding
ENSMUST00000090002 (Hnrnpa2b1-202) 51461124-51469845 protein_coding
ENSMUST00000114459 (Hnrnpa2b1-203) 51460434-51469894 protein_coding
ENSMUSG00000029832 (Nfe2l3)
nuclear factor, erythroid derived 2, like 3 		ENSMUST00000005103 (Nfe2l3-001) 51432670-51458768 protein_coding
ENSMUST00000061507 (Nfe2l3-003) 51432749-51436928 processed_transcript
ENSMUST00000160133 (Nfe2l3-002) 51432749-51456876 protein_coding
ENSMUSG00000029836 (Cbx3)
chromobox 3 		ENSMUST00000031862 (Cbx3-002) 51470530-51483704 protein_coding
ENSMUST00000094623 (Cbx3-001) 51470360-51483033 protein_coding
ENSMUST00000114445 (Cbx3-004) 51470666-51483704 protein_coding
ENSMUST00000114446 (Cbx3-005) 51470695-51483704 protein_coding
ENSMUST00000141711 (Cbx3-007) 51470746-51478600 protein_coding
ENSMUST00000153699 (Cbx3-006) 51470677-51472060 retained_intron
ENSMUST00000156463 (Cbx3-003) 51470663-51475241 retained_intron
ENSMUSG00000038301 (Snx10)
sorting nexin 10 		ENSMUST00000049152 (Snx10-001) 51523901-51590679 protein_coding
ENSMUST00000114439 (Snx10-004) 51544524-51589072 protein_coding
ENSMUST00000137212 (Snx10-006) 51524285-51588436 protein_coding
ENSMUST00000140560 (Snx10-005) 51524260-51580377 protein_coding
ENSMUST00000149024 (Snx10-003) 51544566-51589043 nonsense_mediated_decay
ENSMUST00000155724 (Snx10-002) 51523982-51564088 retained_intron
ENSMUST00000179365 (Snx10-201) 51544523-51590670 protein_coding
ENSMUSG00000097598 (Gm26677)
predicted gene, 26677 		ENSMUST00000180553 (Gm26677-201) 51379710-51392777 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008Q3_0001ENSG00000050344ENST00000056233ENST00000606261ENST00000607375ENSG00000086300ENST00000338523ENST00000396376ENST00000409367ENST00000409838ENST00000416246ENST00000446848ENST00000619420ENSG00000122566ENST00000354667ENST00000356674ENST00000360787ENST00000463181ENST00000618183ENSG00000223561ENST00000423689ENST00000446840ENST00000456777ENSG00000232383ENST00000441690ENSG00000270933ENST00000602992ENSG00000273237ENST00000608362CIL_0008Q3_0002ENSMUSG00000004980ENSMUST00000069949ENSMUST00000090002ENSMUST00000114459ENSMUSG00000029832ENSMUST00000005103ENSMUST00000061507ENSMUST00000160133ENSMUSG00000029836ENSMUST00000031862ENSMUST00000094623ENSMUST00000114445ENSMUST00000114446ENSMUST00000156463ENSMUSG00000038301ENSMUST00000049152ENSMUST00000114439ENSMUST00000137212ENSMUST00000140560ENSMUST00000149024ENSMUST00000155724ENSMUST00000179365ENSMUSG00000097598ENSMUST00000180553
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050344 ENST00000056233 1.649±0.00 1.852±0.00 N/A 0.231±0.14 1.990±1.12 0.475±0.00 0.661±0.00 1.590±0.00 0.167±0.00 2.541±0.55 0.290±0.00 8.851±9.35 36.761±25.65 1.056±0.07
ENST00000606261 1.269±0.00 2.857±0.00 N/A 0.358±0.05 2.130±1.31 1.064±0.00 0.610±0.00 0.995±0.71 0.512±0.00 4.382±0.00 0.161±0.00 9.230±11.15 34.809±27.42 0.813±0.44
ENST00000607375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.546±0.00 N/A N/A N/A
ENSG00000086300 ENST00000338523 3.347±0.00 2.101±0.00 N/A 9.684±1.54 3.946±2.51 0.617±0.00 0.280±0.00 5.024±3.99 5.653±0.00 1.574±0.00 N/A 0.633±0.38 2.493±1.25 0.835±0.00
ENST00000396376 N/A N/A 1.040±0.00 2.266±0.00 N/A N/A N/A 1.988±0.00 1.119±0.00 N/A N/A 0.112±0.00 N/A N/A
ENST00000409367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.608±0.00 2.603±0.00 4.473±0.00 1.919±0.00
ENST00000409838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A N/A N/A
ENST00000412416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416246 N/A N/A N/A N/A N/A N/A 0.454±0.00 N/A N/A N/A N/A 3.680±0.00 3.399±0.00 1.628±0.00
ENST00000446848 N/A N/A N/A N/A 8.249±0.00 N/A 0.240±0.00 11.334±0.00 N/A 3.235±0.00 N/A N/A 0.780±0.00 N/A
ENST00000462993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619420 1.374±0.00 2.531±0.00 N/A 9.752±3.98 4.123±0.00 0.500±0.00 0.220±0.07 8.148±0.00 0.249±0.00 N/A 0.164±0.00 0.634±0.38 0.814±0.00 2.992±0.00
ENSG00000122566 ENST00000354667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.401±0.00 N/A N/A
ENST00000356674 152.434±0.00 422.626±0.00 10.578±0.00 116.997±106.47 88.911±75.65 140.785±122.48 112.167±106.07 193.129±176.33 69.375±62.09 263.744±0.00 82.937±66.91 348.427±240.40 298.777±139.63 556.989±60.65
ENST00000360787 28.841±0.00 N/A N/A N/A 37.372±0.00 N/A N/A N/A N/A N/A 31.143±0.00 N/A N/A N/A
ENST00000463181 N/A N/A 7.626±0.00 2.680±0.00 11.353±0.00 9.243±0.00 2.440±0.00 6.505±0.00 8.320±0.00 16.830±0.00 1.769±0.00 10.965±0.00 N/A N/A
ENST00000476233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618183 N/A N/A N/A N/A 5.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223561 ENST00000423689 N/A N/A N/A 0.096±0.00 0.171±0.00 0.279±0.00 0.071±0.00 N/A 0.052±0.00 N/A N/A N/A N/A N/A
ENST00000446840 0.019±0.00 N/A N/A 0.045±0.00 0.573±0.00 0.306±0.00 0.161±0.10 1.054±0.00 0.145±0.12 N/A N/A 0.113±0.06 0.046±0.02 1.420±0.32
ENST00000456777 N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A
ENSG00000232383 ENST00000441690 0.267±0.00 0.349±0.00 N/A 0.036±0.00 0.312±0.00 0.480±0.00 0.197±0.00 0.175±0.00 0.032±0.00 0.237±0.00 0.442±0.00 0.075±0.00 N/A 0.919±0.55
ENSG00000270933 ENST00000602992 0.664±0.00 0.602±0.00 0.595±0.00 N/A 0.058±0.02 0.075±0.00 0.050±0.00 1.185±0.53 0.441±0.03 0.441±0.19 N/A 1.733±0.28 N/A 0.131±0.03
ENSG00000273237 ENST00000608362 N/A 0.819±0.00 N/A 0.202±0.00 0.137±0.00 0.547±0.52 1.791±1.00 0.563±0.00 0.149±0.03 0.207±0.10 0.611±0.48 0.752±0.52 0.219±0.14 0.183±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004980 ENSMUST00000069949 12.993±1.48 83.870±12.39 N/A N/A 24.290±7.82 27.778±5.32 N/A 14.527±2.60 8.474±0.85 19.910±3.61 N/A 25.095±10.83 58.339±2.23 47.191±31.77
ENSMUST00000090002 17.570±6.80 20.272±0.47 86.911±4.04 177.058±19.15 11.286±1.86 9.628±0.00 33.044±0.93 23.179±8.59 141.134±115.66 14.788±4.32 60.258±21.03 140.828±177.00 205.440±105.57 59.780±66.84
ENSMUST00000114459 28.431±10.23 16.990±2.62 61.337±20.70 72.910±61.83 25.531±3.26 17.765±2.43 18.148±1.67 21.716±3.36 81.213±72.66 30.273±3.55 18.182±11.18 36.120±26.03 44.901±23.25 16.187±5.08
ENSMUSG00000029832 ENSMUST00000005103 1.494±1.00 0.117±0.06 19.620±3.95 2.703±1.13 1.251±0.57 0.855±0.28 0.133±0.06 0.430±0.16 0.180±0.15 1.323±0.36 0.086±0.03 0.643±0.31 0.791±0.64 0.524±0.18
ENSMUST00000061507 N/A 0.174±0.06 N/A N/A N/A 0.420±0.12 0.090±0.00 0.219±0.00 0.208±0.00 N/A N/A 0.422±0.22 N/A N/A
ENSMUST00000160133 0.038±0.00 0.060±0.04 N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A 0.211±0.00
ENSMUSG00000029836 ENSMUST00000031862 3.030±1.67 5.454±0.29 33.612±0.00 28.064±10.31 2.722±1.08 3.265±0.66 1.367±0.48 3.345±1.47 17.193±19.08 3.729±1.27 15.614±0.54 7.990±9.05 44.701±24.39 9.898±0.00
ENSMUST00000094623 3.246±0.00 N/A N/A N/A N/A 2.789±0.00 N/A N/A N/A N/A N/A 5.284±0.00 N/A N/A
ENSMUST00000114445 0.736±0.00 N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114446 4.535±1.09 N/A N/A 23.045±11.42 3.596±1.63 3.140±0.00 4.949±1.14 4.842±2.43 10.490±8.22 6.903±2.01 N/A 23.791±13.66 22.585±12.89 N/A
ENSMUST00000141711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156463 1.493±0.71 5.342±1.02 N/A N/A 2.171±1.36 2.322±0.71 N/A 1.391±0.38 0.539±0.18 2.774±0.76 N/A 4.570±0.79 N/A N/A
ENSMUSG00000038301 ENSMUST00000049152 1.985±0.58 0.725±0.36 3.252±0.73 7.120±0.32 1.449±0.46 0.282±0.12 0.894±0.24 0.820±0.27 1.647±0.84 1.830±0.49 2.550±1.13 1.037±0.66 5.530±2.03 N/A
ENSMUST00000114439 2.341±0.00 N/A N/A N/A 1.848±0.45 N/A 0.566±0.00 0.954±0.19 N/A 1.391±0.00 N/A 0.972±0.20 N/A 0.190±0.00
ENSMUST00000137212 4.143±0.46 0.740±0.36 N/A N/A 3.690±1.34 0.741±0.55 0.860±0.11 0.863±0.17 1.850±0.22 1.069±0.25 N/A 0.916±0.50 N/A N/A
ENSMUST00000140560 N/A N/A N/A 22.620±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.744±0.00
ENSMUST00000149024 N/A 0.457±0.00 N/A 24.131±0.00 N/A N/A N/A N/A N/A N/A N/A 4.367±2.98 21.929±9.21 0.636±0.00
ENSMUST00000155724 0.562±0.00 0.182±0.09 N/A N/A 0.486±0.08 N/A N/A 0.106±0.00 0.444±0.01 0.439±0.12 N/A 0.439±0.21 N/A N/A
ENSMUST00000179365 4.063±0.62 0.814±0.38 2.054±0.73 N/A 3.783±1.33 1.079±0.34 0.740±0.36 0.395±0.13 2.786±2.65 0.601±0.05 1.667±1.09 2.385±1.60 5.538±2.70 0.908±0.00
ENSMUSG00000097598 ENSMUST00000180553 N/A N/A 0.142±0.00 0.130±0.05 0.064±0.01 0.073±0.02 0.019±0.00 0.023±0.00 0.016±0.00 N/A N/A 0.148±0.07 0.010±0.01 0.107±0.05

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