C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4, sodium bicarbonate cotransporter, member 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000050438 SLC4A8 9606 + 12:51391317-51515763 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319957 SLC4A8-006 51424973-51497862 retained_intron
  ENST00000358657 SLC4A8-201 51391317-51515763 protein_coding
  ENST00000453097 SLC4A8-001 51424771-51515763 protein_coding
  ENST00000514353 SLC4A8-003 51425117-51480610 protein_coding
  ENST00000535225 SLC4A8-016 51391317-51474575 protein_coding
  ENST00000546497 SLC4A8-015 51424934-51440852 retained_intron
  ENST00000546663 SLC4A8-014 51469069-51471580 processed_transcript
  ENST00000546872 SLC4A8-013 51494873-51497233 retained_intron
  ENST00000546875 SLC4A8-005 51501828-51509196 retained_intron
  ENST00000547697 SLC4A8-002 51391736-51462892 retained_intron
  ENST00000548352 SLC4A8-010 51420100-51453586 processed_transcript
  ENST00000548616 SLC4A8-012 51494351-51495018 retained_intron
  ENST00000548811 SLC4A8-008 51424868-51441179 processed_transcript
  ENST00000550211 SLC4A8-009 51461218-51469681 processed_transcript
  ENST00000551071 SLC4A8-007 51440708-51497862 retained_intron
  ENST00000552001 SLC4A8-011 51450828-51457443 retained_intron
  ENST00000604314 SLC4A8-019 51403163-51497864 retained_intron
  ENST00000615370 SLC4A8-018 51391348-51403109 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000358657ENST00000453097ENST00000546875ENST00000552001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000358657 N/A N/A N/A 1.604±0.00 0.154±0.00 N/A 0.014±0.01 N/A N/A 0.015±0.00 N/A N/A
ENST00000453097 0.090±0.00 0.349±0.00 0.119±0.00 4.048±1.51 0.305±0.00 0.207±0.05 0.016±0.01 0.404±0.37 0.445±0.06 0.016±0.00 0.500±0.40 2.976±1.41
ENST00000546875 N/A N/A 0.548±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552001 N/A N/A N/A N/A N/A N/A N/A 1.746±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JU CIL_0006JU_0001 CGP 12:51328443-51392867
CIL_0006JV CIL_0006JV_0001 CGP 12:51351247-51515763
CIL_0006JW CIL_0006JW_0001 CGP 12:51391317-51812864

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006814 IEA sodium ion transport
GO:0006820 IEA anion transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0015701 TAS bicarbonate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0032809 IEA neuronal cell body membrane
GO:0043005 IEA neuron projection
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015531 SLC4A8 solute carrier family 4, sodium bicarbonate cotransporter, member 8 protein_coding Danio_rerio
ENSMUSG00000023032 Slc4a8 solute carrier family 4 (anion exchanger), member 8 protein_coding Mus_musculus

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