C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023032 Slc4a8 10090 + 15:100761747-100823968 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023776 Slc4a8-001 100761747-100823968 protein_coding
  ENSMUST00000160256 Slc4a8-003 100761888-100774963 retained_intron
  ENSMUST00000161564 Slc4a8-004 100761869-100775084 nonsense_mediated_decay
  ENSMUST00000162049 Slc4a8-002 100781254-100815935 protein_coding
  ENSMUST00000162483 Slc4a8-006 100812189-100816030 processed_transcript
  ENSMUST00000162744 Slc4a8-007 100814354-100815800 retained_intron
  ENSMUST00000162805 Slc4a8-005 100802748-100806289 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023776ENSMUST00000162049ENSMUST00000162483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023776 0.594±0.47 1.197±0.33 0.862±0.10 6.526±0.63 0.804±0.50 0.574±0.12 0.130±0.04 0.899±0.08 0.031±0.02 1.134±0.54 0.121±0.04 2.078±0.91 0.794±0.38 2.514±1.05
ENSMUST00000162049 0.591±0.26 0.370±0.00 1.000±0.25 N/A 2.639±1.62 0.308±0.03 0.246±0.00 1.538±0.39 0.097±0.05 1.040±0.00 0.396±0.26 1.964±0.69 3.835±1.32 4.698±1.43
ENSMUST00000162483 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JV CIL_0006JV_0002 CGP 15:100691813-100823968
CIL_0006JW CIL_0006JW_0002 CGP 15:100761747-101045929

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 IDA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006820 IEA anion transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0032809 IDA neuronal cell body membrane
GO:0043005 IDA neuron projection
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015531 SLC4A8 solute carrier family 4, sodium bicarbonate cotransporter, member 8 protein_coding Danio_rerio
ENSG00000050438 SLC4A8 solute carrier family 4, sodium bicarbonate cotransporter, member 8 protein_coding Homo_sapiens

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