C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4, sodium bicarbonate cotransporter, member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453097 SLC4A8-001 ENSG00000050438 9606 + 12:51424771-51515763 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000453097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000453097 0.090±0.00 0.349±0.00 0.119±0.00 4.048±1.51 0.305±0.00 0.207±0.05 0.016±0.01 0.404±0.37 0.445±0.06 0.016±0.00 0.500±0.40 2.976±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JU CIL_0006JU_0001 CGP 12:51328443-51392867
CIL_0006JV CIL_0006JV_0001 CGP 12:51351247-51515763
CIL_0006JW CIL_0006JW_0001 CGP 12:51391317-51812864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006814 IEA sodium ion transport
GO:0006820 IEA anion transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0015701 TAS bicarbonate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0032809 IEA neuronal cell body membrane
GO:0043005 IEA neuron projection
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023776 Slc4a8-001 protein_coding Mus_musculus 0 4072
ENSMUST00000162049 Slc4a8-002 protein_coding Mus_musculus 0 3771
ENSDART00000047416 SLC4A8-001 protein_coding Danio_rerio 0 1022
ENSMUST00000160256 Slc4a8-003 retained_intron Mus_musculus 0 202
ENSMUST00000161564 Slc4a8-004 nonsense_mediated_decay Mus_musculus 0 198
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000006 73
ENSMUST00000157025 Ctr9-003 retained_intron Mus_musculus 0.0008 53
ENSMUST00000152019 Ctr9-002 retained_intron Mus_musculus 0.0008 53

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