C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006JW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000050438-ENSG00000196876 CGP 9606 12:51391317-51812864
GeneTranscriptPositionBiotype
ENSG00000139629 (GALNT6)
polypeptide N-acetylgalactosaminyltransferase 6 		ENST00000356317 (GALNT6-001) 51353753-51391409 protein_coding
ENST00000543196 (GALNT6-002) 51351247-51383563 protein_coding
ENST00000603188 (GALNT6-012) 51379594-51391434 protein_coding
ENST00000603203 (GALNT6-018) 51379786-51391651 processed_transcript
ENST00000603482 (GALNT6-021) 51382335-51391675 processed_transcript
ENST00000603563 (GALNT6-015) 51379616-51391299 protein_coding
ENST00000603641 (GALNT6-003) 51354271-51379781 nonsense_mediated_decay
ENST00000603680 (GALNT6-004) 51353769-51360226 retained_intron
ENST00000604381 (GALNT6-008) 51379370-51391652 protein_coding
ENST00000604426 (GALNT6-005) 51379546-51392867 protein_coding
ENST00000604506 (GALNT6-017) 51379712-51391436 protein_coding
ENST00000604847 (GALNT6-011) 51379413-51391436 protein_coding
ENST00000605055 (GALNT6-009) 51379713-51391652 protein_coding
ENST00000605089 (GALNT6-020) 51379841-51391390 processed_transcript
ENST00000605138 (GALNT6-016) 51379664-51391629 protein_coding
ENST00000605367 (GALNT6-013) 51382461-51391404 processed_transcript
ENST00000605617 (GALNT6-007) 51379576-51391663 protein_coding
ENST00000605720 (GALNT6-010) 51382461-51391591 processed_transcript
ENST00000605822 (GALNT6-006) 51379813-51391955 processed_transcript
ENSG00000196876 (SCN8A)
sodium channel, voltage gated, type VIII, alpha subunit 		ENST00000354534 (SCN8A-001) 51591236-51812864 protein_coding
ENST00000355133 (SCN8A-005) 51662818-51807429 protein_coding
ENST00000545061 (SCN8A-201) 51591236-51812864 protein_coding
ENST00000546961 (SCN8A-002) 51590266-51662820 processed_transcript
ENST00000548086 (SCN8A-006) 51774240-51786771 processed_transcript
ENST00000550891 (SCN8A-003) 51590926-51766251 protein_coding
ENST00000551216 (SCN8A-004) 51686423-51745948 protein_coding
ENST00000599343 (SCN8A-202) 51591236-51812864 protein_coding
ENSG00000257851 (HNRNPA3P10)
heterogeneous nuclear ribonucleoprotein A3 pseudogene 10 		ENST00000547726 (HNRNPA3P10-001) 51712469-51713606 processed_pseudogene
ENSG00000260122 (RP11-923I11.3)
 ENST00000565518 (RP11-923I11.3-001) 51809705-51810600 lincRNA
ENSG00000271065 (RP11-607P23.1)
 ENST00000604939 (RP11-607P23.1-001) 51421956-51424611 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006JW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023032-ENSMUSG00000023033 CGP 10090 15:100761747-101045929
GeneTranscriptPositionBiotype
ENSMUSG00000023032 (Slc4a8)
solute carrier family 4 (anion exchanger), member 8 		ENSMUST00000023776 (Slc4a8-001) 100761747-100823968 protein_coding
ENSMUST00000160256 (Slc4a8-003) 100761888-100774963 retained_intron
ENSMUST00000161564 (Slc4a8-004) 100761869-100775084 nonsense_mediated_decay
ENSMUST00000162049 (Slc4a8-002) 100781254-100815935 protein_coding
ENSMUST00000162483 (Slc4a8-006) 100812189-100816030 processed_transcript
ENSMUST00000162744 (Slc4a8-007) 100814354-100815800 retained_intron
ENSMUST00000162805 (Slc4a8-005) 100802748-100806289 retained_intron
ENSMUSG00000023033 (Scn8a)
sodium channel, voltage-gated, type VIII, alpha 		ENSMUST00000082209 (Scn8a-201) 100870683-101045929 protein_coding
ENSMUST00000096198 (Scn8a-202) 100933429-100940798 protein_coding
ENSMUST00000108908 (Scn8a-203) 100955398-101045929 protein_coding
ENSMUST00000108909 (Scn8a-204) 100955398-101045929 protein_coding
ENSMUST00000108910 (Scn8a-205) 100936271-101045929 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006JW_0001ENSG00000139629ENST00000356317ENST00000543196ENST00000603188ENST00000603203ENST00000603482ENST00000603563ENST00000603641ENST00000603680ENST00000604381ENST00000604426ENST00000604506ENST00000604847ENST00000605055ENST00000605089ENST00000605138ENST00000605367ENST00000605617ENST00000605720ENST00000605822ENSG00000196876ENST00000354534ENST00000355133ENST00000545061ENST00000546961ENST00000548086ENST00000550891ENST00000551216ENST00000599343ENSG00000257851ENST00000547726ENSG00000260122ENST00000565518ENSG00000271065ENST00000604939CIL_0006JW_0002ENSMUSG00000023032ENSMUST00000023776ENSMUST00000160256ENSMUST00000161564ENSMUST00000162049ENSMUST00000162483ENSMUST00000162744ENSMUST00000162805ENSMUSG00000023033ENSMUST00000082209ENSMUST00000096198ENSMUST00000108908ENSMUST00000108909ENSMUST00000108910
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006JW_0001ENSG00000139629ENST00000356317ENST00000543196ENST00000603680ENST00000604847ENSG00000196876ENST00000354534ENST00000355133ENST00000545061ENST00000550891ENST00000551216ENST00000599343ENSG00000257851ENST00000547726ENSG00000260122ENST00000565518ENSG00000271065ENST00000604939CIL_0006JW_0002ENSMUSG00000023032ENSMUST00000023776ENSMUST00000162049ENSMUST00000162483ENSMUSG00000023033ENSMUST00000082209ENSMUST00000096198ENSMUST00000108908ENSMUST00000108909ENSMUST00000108910
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139629 ENST00000356317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.376±0.00 N/A N/A
ENST00000543196 0.201±0.00 2.252±0.00 0.343±0.00 N/A 1.189±0.87 1.198±0.00 0.149±0.13 1.874±0.00 0.360±0.02 3.292±0.00 0.165±0.00 1.396±0.51 5.529±1.93 1.741±0.00
ENST00000603188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603680 N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A
ENST00000604381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604847 N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A 3.122±0.00 N/A N/A N/A N/A N/A
ENST00000605055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196876 ENST00000354534 N/A N/A N/A 5.685±3.39 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000355133 N/A N/A N/A N/A N/A 0.365±0.00 N/A N/A N/A N/A N/A N/A N/A 0.598±0.00
ENST00000545061 0.024±0.00 N/A N/A N/A 0.061±0.00 0.234±0.05 0.010±0.00 N/A 0.055±0.02 0.052±0.00 0.014±0.00 0.085±0.02 0.036±0.01 0.573±0.00
ENST00000546961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550891 N/A N/A 0.755±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A
ENST00000551216 N/A N/A N/A 21.950±0.00 0.334±0.00 0.643±0.00 N/A N/A N/A 0.179±0.00 N/A 0.280±0.12 N/A N/A
ENST00000599343 N/A N/A N/A 3.246±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257851 ENST00000547726 0.011±0.00 N/A 0.134±0.00 N/A 0.011±0.00 0.031±0.02 N/A 0.011±0.00 N/A N/A 0.010±0.00 0.511±0.00 N/A 0.056±0.03
ENSG00000260122 ENST00000565518 0.121±0.00 N/A N/A N/A N/A N/A 0.067±0.02 N/A N/A 0.071±0.00 N/A N/A N/A N/A
ENSG00000271065 ENST00000604939 N/A N/A N/A 0.128±0.00 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.085±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023032 ENSMUST00000023776 0.594±0.47 1.197±0.33 0.862±0.10 6.526±0.63 0.804±0.50 0.574±0.12 0.130±0.04 0.899±0.08 0.031±0.02 1.134±0.54 0.121±0.04 2.078±0.91 0.794±0.38 2.514±1.05
ENSMUST00000160256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162049 0.591±0.26 0.370±0.00 1.000±0.25 N/A 2.639±1.62 0.308±0.03 0.246±0.00 1.538±0.39 0.097±0.05 1.040±0.00 0.396±0.26 1.964±0.69 3.835±1.32 4.698±1.43
ENSMUST00000162483 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A N/A
ENSMUST00000162744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000023033 ENSMUST00000082209 0.056±0.00 N/A N/A 1.675±0.00 0.074±0.00 N/A N/A 0.033±0.00 0.112±0.00 N/A N/A 0.101±0.02 0.064±0.00 N/A
ENSMUST00000096198 0.129±0.01 N/A 0.120±0.00 N/A 0.483±0.04 0.057±0.00 0.027±0.00 0.150±0.08 N/A N/A N/A 0.453±0.28 0.326±0.16 N/A
ENSMUST00000108908 N/A 0.147±0.00 N/A 5.674±0.00 N/A 0.041±0.00 0.014±0.01 0.037±0.00 0.021±0.01 N/A 0.010±0.00 0.067±0.04 N/A N/A
ENSMUST00000108909 N/A N/A 0.028±0.00 3.633±1.92 0.217±0.00 0.084±0.00 N/A N/A 0.020±0.01 0.048±0.00 N/A 0.106±0.02 0.199±0.00 N/A
ENSMUST00000108910 N/A 0.140±0.03 N/A 14.224±0.00 N/A N/A N/A 0.047±0.00 N/A N/A N/A 0.051±0.00 0.058±0.02 N/A

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