C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXIII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000050767 COL23A1 9606 - 5:178237618-178590555 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000390654 COL23A1-001 178237618-178590555 protein_coding
  ENST00000407622 COL23A1-201 178237620-178306934 protein_coding
  ENST00000484750 COL23A1-002 178523505-178562726 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000390654ENST00000407622
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000390654 N/A 0.190±0.00 N/A 0.220±0.00 0.078±0.00 N/A 1.622±1.26 0.693±0.57 N/A 0.831±0.67 N/A 0.132±0.10 0.431±0.00 N/A
ENST00000407622 0.288±0.00 0.662±0.00 0.021±0.00 0.679±0.39 0.299±0.00 1.006±0.00 5.254±0.00 0.913±0.00 0.127±0.08 1.643±0.00 0.156±0.00 0.256±0.22 0.327±0.06 1.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XD CIL_0000XD_0002 CGP 5:178237618-178630615

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 TAS plasma membrane
GO:0016021 IEA integral component of membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089078 COL23A1 (1 of 2) collagen, type XXIII, alpha 1 protein_coding Danio_rerio
ENSDARG00000095339 COL23A1 (2 of 2) collagen, type XXIII, alpha 1 protein_coding Danio_rerio
ENSMUSG00000063564 Col23a1 collagen, type XXIII, alpha 1 protein_coding Mus_musculus

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