C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000390654 COL23A1-001 ENSG00000050767 9606 - 5:178237618-178590555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLungOvaryPlacentaENST00000390654
Transcript ID Adrenal Brain Breast Heart Kidney Lung Ovary Placenta
ENST00000390654 0.190±0.00 0.220±0.00 0.078±0.00 1.622±1.26 0.693±0.57 0.831±0.67 0.132±0.10 0.431±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XD CIL_0000XD_0002 CGP 5:178237618-178630615

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 TAS plasma membrane
GO:0016021 IEA integral component of membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102765 Col23a1-001 protein_coding Mus_musculus 0 1757

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