C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000XD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000095339-ENSDARG00000089372 CGP 7955 14:6601558-6910138
GeneTranscriptPositionBiotype
ENSDARG00000089372 (clk4a)
CDC-like kinase 4a 		ENSDART00000126279 (clk4a-201) 6900178-6910138 protein_coding
ENSDARG00000093896 (si:dkeyp-44a8.5)
si:dkeyp-44a8.5 		ENSDART00000144476 (si:dkeyp-44a8.5-001) 6683811-6684983 processed_transcript
ENSDARG00000095339 (COL23A1 (2 of 2))
collagen, type XXIII, alpha 1 		ENSDART00000133031 (COL23A1 (2 of 2)-001) 6601558-6693603 protein_coding
CIL_0000XD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000050767-ENSG00000113240 CGP 9606 5:178237618-178630615
GeneTranscriptPositionBiotype
ENSG00000050767 (COL23A1)
collagen, type XXIII, alpha 1 		ENST00000390654 (COL23A1-001) 178237618-178590555 protein_coding
ENST00000407622 (COL23A1-201) 178237620-178306934 protein_coding
ENST00000484750 (COL23A1-002) 178523505-178562726 processed_transcript
ENSG00000113240 (CLK4)
CDC-like kinase 4 		ENST00000316308 (CLK4-001) 178602664-178627114 protein_coding
ENST00000519132 (CLK4-008) 178603270-178617388 retained_intron
ENST00000519583 (CLK4-013) 178603272-178627041 retained_intron
ENST00000520126 (CLK4-007) 178617731-178627052 retained_intron
ENST00000520199 (CLK4-006) 178617071-178627054 retained_intron
ENST00000520878 (CLK4-005) 178602664-178627088 retained_intron
ENST00000520909 (CLK4-002) 178617697-178630615 retained_intron
ENST00000520957 (CLK4-012) 178621812-178627030 protein_coding
ENST00000521621 (CLK4-003) 178603270-178627029 nonsense_mediated_decay
ENST00000522136 (CLK4-009) 178603168-178627055 nonsense_mediated_decay
ENST00000522556 (CLK4-004) 178618694-178627112 nonsense_mediated_decay
ENST00000522749 (CLK4-011) 178616882-178620119 processed_transcript
ENST00000523013 (CLK4-010) 178621809-178623339 retained_intron
ENST00000611575 (CLK4-201) 178603589-178627001 protein_coding
ENST00000611733 (CLK4-202) 178602665-178627053 protein_coding
ENSG00000242341 (RN7SL646P)
RNA, 7SL, cytoplasmic 646, pseudogene 		ENST00000492969 (RN7SL646P-201) 178377924-178378220 misc_RNA
ENSG00000245688 (CTB-26E19.1)
 ENST00000501834 (CTB-26E19.1-001) 178438681-178443094 sense_intronic
ENSG00000253698 (RP11-1259L22.1)
 ENST00000521803 (RP11-1259L22.1-001) 178350867-178352250 antisense
ENSG00000271681 (RP11-1259L22.2)
 ENST00000604356 (RP11-1259L22.2-001) 178344843-178345316 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XD_0001ENSDARG00000089372ENSDART00000126279ENSDARG00000093896ENSDART00000144476ENSDARG00000095339ENSDART00000133031CIL_0000XD_0002ENSG00000050767ENST00000390654ENST00000407622ENST00000484750ENSG00000113240ENST00000316308ENST00000519132ENST00000519583ENST00000520126ENST00000520199ENST00000520878ENST00000520909ENST00000520957ENST00000521621ENST00000522136ENST00000522556ENST00000522749ENST00000523013ENST00000611575ENST00000611733ENSG00000242341ENST00000492969ENSG00000245688ENST00000501834ENSG00000253698ENST00000521803ENSG00000271681ENST00000604356
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XD_0001ENSDARG00000089372ENSDART00000126279ENSDARG00000093896ENSDART00000144476ENSDARG00000095339ENSDART00000133031CIL_0000XD_0002ENSG00000050767ENST00000390654ENST00000407622ENSG00000113240ENST00000316308ENST00000519583ENST00000520878ENST00000520957ENST00000521621ENST00000611575ENSG00000242341ENST00000492969ENSG00000245688ENST00000501834ENSG00000253698ENST00000521803ENSG00000271681ENST00000604356
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000089372 ENSDART00000126279 N/A N/A N/A 24.428±0.00 N/A N/A N/A 22.323±0.00 1.684±0.00 N/A 45.575±0.00 N/A N/A N/A
ENSDARG00000093896 ENSDART00000144476 N/A N/A N/A 1.130±0.00 N/A N/A N/A N/A N/A N/A 0.800±0.00 N/A N/A N/A
ENSDARG00000095339 ENSDART00000133031 N/A N/A N/A 0.270±0.08 N/A N/A 0.201±0.04 1.071±0.00 0.022±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050767 ENST00000390654 N/A 0.190±0.00 N/A 0.220±0.00 0.078±0.00 N/A 1.622±1.26 0.693±0.57 N/A 0.831±0.67 N/A 0.132±0.10 0.431±0.00 N/A
ENST00000407622 0.288±0.00 0.662±0.00 0.021±0.00 0.679±0.39 0.299±0.00 1.006±0.00 5.254±0.00 0.913±0.00 0.127±0.08 1.643±0.00 0.156±0.00 0.256±0.22 0.327±0.06 1.053±0.00
ENST00000484750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000113240 ENST00000316308 1.092±0.00 4.068±0.00 N/A 2.226±0.00 3.048±0.00 4.021±0.00 1.326±0.00 4.147±0.00 1.875±0.60 3.328±0.00 2.412±0.00 3.506±1.27 1.028±0.55 4.085±0.00
ENST00000519132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519583 0.381±0.00 N/A 3.249±0.00 3.149±0.00 1.557±0.72 3.297±0.00 0.781±0.17 1.585±0.12 0.825±0.55 3.738±0.00 N/A 1.130±0.44 0.121±0.00 N/A
ENST00000520126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520878 N/A N/A 2.610±0.00 1.599±0.65 2.432±0.00 N/A 1.042±0.00 2.591±0.00 1.004±0.00 5.522±0.00 1.844±0.00 N/A 0.125±0.00 N/A
ENST00000520909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520957 N/A N/A 4.334±0.00 N/A 2.750±0.00 5.048±0.00 1.754±0.00 2.916±0.00 2.189±0.00 6.082±0.00 1.300±0.00 1.988±0.00 N/A N/A
ENST00000521621 0.813±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.064±0.00 N/A N/A
ENST00000522136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611575 N/A N/A N/A 5.170±0.00 3.777±0.00 3.329±0.00 2.004±0.00 N/A 2.097±1.15 3.126±0.00 3.856±1.60 2.834±0.54 0.881±0.34 9.718±5.76
ENST00000611733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242341 ENST00000492969 N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A N/A N/A 0.148±0.00
ENSG00000245688 ENST00000501834 N/A N/A 0.045±0.00 N/A 0.071±0.00 N/A 0.098±0.00 0.024±0.00 N/A N/A N/A 0.029±0.00 N/A 0.062±0.02
ENSG00000253698 ENST00000521803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00
ENSG00000271681 ENST00000604356 N/A N/A N/A N/A N/A N/A N/A 4.982±0.00 5.007±0.00 N/A N/A N/A N/A 0.060±0.00

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