C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 36
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000055483 USP36 9606 - 17:78787381-78841441 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312010 USP36-201 78796883-78840887 protein_coding
  ENST00000449938 USP36-202 78807255-78836363 protein_coding
  ENST00000542802 USP36-003 78795653-78840670 protein_coding
  ENST00000586066 USP36-021 78812860-78828964 protein_coding
  ENST00000586531 USP36-012 78828946-78840713 protein_coding
  ENST00000586896 USP36-015 78829004-78838794 protein_coding
  ENST00000587010 USP36-027 78787381-78798990 nonsense_mediated_decay
  ENST00000587379 USP36-028 78791863-78798492 nonsense_mediated_decay
  ENST00000587783 USP36-014 78836164-78840647 protein_coding
  ENST00000588086 USP36-008 78802461-78840864 non_stop_decay
  ENST00000588130 USP36-029 78787381-78799722 protein_coding
  ENST00000588365 USP36-011 78836206-78841225 protein_coding
  ENST00000588467 USP36-024 78807613-78819097 processed_transcript
  ENST00000589225 USP36-009 78787467-78840780 nonsense_mediated_decay
  ENST00000589254 USP36-023 78818667-78821360 retained_intron
  ENST00000589424 USP36-018 78823122-78840781 protein_coding
  ENST00000590312 USP36-025 78812972-78818943 retained_intron
  ENST00000590546 USP36-002 78826473-78840872 protein_coding
  ENST00000591052 USP36-030 78787466-78798455 nonsense_mediated_decay
  ENST00000591942 USP36-013 78828992-78840786 nonsense_mediated_decay
  ENST00000592231 USP36-004 78795653-78798984 protein_coding
  ENST00000592275 USP36-010 78836124-78841441 protein_coding
  ENST00000592326 USP36-031 78795652-78797061 processed_transcript
  ENST00000592907 USP36-017 78836025-78840766 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312010ENST00000449938ENST00000542802ENST00000588086ENST00000588130ENST00000589225ENST00000589424ENST00000590546ENST00000592231ENST00000592907
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.594±0.00 N/A N/A
ENST00000449938 N/A N/A N/A N/A 2.545±0.00 1.433±0.00 0.645±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000542802 4.490±0.00 3.451±0.00 N/A 3.231±0.00 1.936±0.00 N/A 1.528±0.00 N/A N/A N/A N/A 5.751±4.42 3.435±0.00 4.473±1.13
ENST00000588086 N/A N/A 0.712±0.00 0.831±0.00 1.244±0.00 N/A N/A N/A N/A N/A N/A 1.133±0.00 1.540±0.00 N/A
ENST00000588130 N/A N/A N/A N/A N/A 3.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.312±0.00 N/A N/A
ENST00000589424 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.055±0.00 N/A N/A N/A N/A
ENST00000590546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.189±0.00 N/A N/A N/A
ENST00000592231 2.938±0.00 7.625±0.00 1.903±0.00 0.739±0.00 2.146±0.00 1.891±0.00 N/A 5.518±0.00 0.958±0.00 2.594±0.38 2.485±0.00 6.244±2.71 5.178±1.89 4.152±0.00
ENST00000592907 N/A N/A N/A N/A N/A N/A 2.245±0.00 N/A 7.106±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062I CIL_00062I_0001 CGP 17:78674048-78841441
CIL_0003UE CIL_0003UE_0002 CGP 17:78787381-78925387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032327 usp36 ubiquitin specific peptidase 36 protein_coding Danio_rerio
ENSMUSG00000033909 Usp36 ubiquitin specific peptidase 36 protein_coding Mus_musculus

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