C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 36
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542802 USP36-003 ENSG00000055483 9606 - 17:78795653-78840670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartOvaryPlacentaTestisENST00000542802
Transcript ID Adipose Adrenal Brain Breast Heart Ovary Placenta Testis
ENST00000542802 4.490±0.00 3.451±0.00 3.231±0.00 1.936±0.00 1.528±0.00 5.751±4.42 3.435±0.00 4.473±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062I CIL_00062I_0001 CGP 17:78674048-78841441
CIL_0003UE CIL_0003UE_0002 CGP 17:78787381-78925387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092382 Usp36-201 protein_coding Mus_musculus 0 1945
ENSMUST00000106296 Usp36-001 protein_coding Mus_musculus 0 1945
ENSMUST00000144153 Usp36-003 protein_coding Mus_musculus 0 1788
ENSMUST00000151433 Usp36-002 retained_intron Mus_musculus 0 424
ENSMUST00000141647 Usp36-004 retained_intron Mus_musculus 8e-31 141

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