C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific methyltransferase 2C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000055609 KMT2C 9606 - 7:152134922-152436005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262189 KMT2C-001 152134925-152436005 protein_coding
  ENST00000355193 KMT2C-201 152134929-152436005 protein_coding
  ENST00000360104 KMT2C-009 152134922-152177968 protein_coding
  ENST00000418061 KMT2C-015 152152899-152162164 protein_coding
  ENST00000418673 KMT2C-008 152224122-152248019 protein_coding
  ENST00000424877 KMT2C-010 152135533-152163334 protein_coding
  ENST00000452749 KMT2C-013 152315265-152435799 protein_coding
  ENST00000473186 KMT2C-002 152136584-152239069 retained_intron
  ENST00000485241 KMT2C-016 152152889-152155005 processed_transcript
  ENST00000489110 KMT2C-014 152220042-152222067 retained_intron
  ENST00000490130 KMT2C-003 152309934-152312296 retained_intron
  ENST00000558084 KMT2C-018 152134925-152436005 nonsense_mediated_decay
  ENST00000558665 KMT2C-017 152177829-152182219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262189ENST00000355193ENST00000360104ENST00000424877ENST00000473186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262189 0.522±0.00 N/A 1.234±0.00 4.941±0.00 2.206±0.00 3.936±0.00 0.690±0.00 0.524±0.00 2.896±0.00 N/A N/A 2.535±0.00 N/A N/A
ENST00000355193 0.559±0.00 N/A 1.244±0.00 N/A 2.218±0.00 5.946±0.00 0.695±0.00 0.577±0.00 2.909±0.00 1.699±0.85 N/A 1.224±0.94 0.317±0.00 N/A
ENST00000360104 0.884±0.00 1.776±0.00 N/A 1.226±0.00 1.302±0.00 N/A 0.763±0.00 0.943±0.00 N/A 0.787±0.00 N/A 1.425±0.04 0.408±0.06 1.822±0.52
ENST00000424877 2.429±0.00 N/A N/A 1.362±0.00 1.528±0.00 N/A N/A 1.334±0.00 0.514±0.00 2.235±0.00 3.599±0.00 3.021±0.66 7.073±0.00 5.400±0.00
ENST00000473186 N/A N/A N/A N/A N/A N/A 1.320±0.00 N/A N/A 3.750±0.00 2.092±0.00 2.796±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027A CIL_00027A_0001 CGP 7:152025674-152436005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0008270 IEA zinc ion binding
GO:0016571 IEA histone methylation
GO:0032259 IEA methylation
GO:0035097 IDA histone methyltransferase complex
GO:0035556 IEA intracellular signal transduction
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0044822 IDA poly(A) RNA binding
GO:0051568 IDA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075560 kmt2cb lysine (K)-specific methyltransferase 2Cb protein_coding Danio_rerio
ENSDARG00000079312 kmt2ca lysine (K)-specific methyltransferase 2Ca protein_coding Danio_rerio
ENSMUSG00000038056 Kmt2c lysine (K)-specific methyltransferase 2C protein_coding Mus_musculus

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