C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger and CCCH-type domains 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000056586 RC3H2 9606 - 9:122844556-122905341 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335387 RC3H2-007 122873786-122905215 protein_coding
  ENST00000357244 RC3H2-201 122849453-122905283 protein_coding
  ENST00000373670 RC3H2-001 122844556-122898110 protein_coding
  ENST00000398671 RC3H2-010 122853774-122855737 protein_coding
  ENST00000423239 RC3H2-002 122853745-122905341 protein_coding
  ENST00000454740 RC3H2-008 122849437-122854606 protein_coding
  ENST00000471874 RC3H2-006 122890171-122897534 protein_coding
  ENST00000478216 RC3H2-004 122890170-122905280 processed_transcript
  ENST00000495727 RC3H2-009 122849799-122851569 retained_intron
  ENST00000498479 RC3H2-003 122847555-122905222 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000357244ENST00000373670ENST00000423239ENST00000498479
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000357244 1.584±0.00 3.550±0.00 N/A N/A 1.635±0.00 N/A 2.539±0.00 N/A N/A 3.229±0.00
ENST00000373670 N/A N/A 0.985±0.00 0.511±0.00 N/A N/A N/A N/A N/A 0.708±0.24
ENST00000423239 N/A N/A N/A N/A N/A N/A N/A N/A 0.944±0.00 N/A
ENST00000498479 0.939±0.00 2.339±0.00 3.598±0.00 1.753±0.00 0.839±0.00 0.959±0.00 3.235±0.00 3.127±0.00 N/A 1.904±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WK CIL_0006WK_0001 CGP 9:122844556-122913330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IMP protein polyubiquitination
GO:0001782 IEA B cell homeostasis
GO:0003677 IDA DNA binding
GO:0003729 IEA mRNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009791 IEA post-embryonic development
GO:0009986 IDA cell surface
GO:0010468 IEA regulation of gene expression
GO:0010608 IEA posttranscriptional regulation of gene expression
GO:0016020 IDA membrane
GO:0035264 IEA multicellular organism growth
GO:0042098 IEA T cell proliferation
GO:0043029 IEA T cell homeostasis
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048286 IEA lung alveolus development
GO:0048535 IEA lymph node development
GO:0048536 IEA spleen development
GO:0060173 IEA limb development
GO:0061470 IEA T follicular helper cell differentiation
GO:1901224 IEA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063050 rc3h2 ring finger and CCCH-type domains 2 protein_coding Danio_rerio
ENSMUSG00000075376 Rc3h2 ring finger and CCCH-type zinc finger domains 2 protein_coding Mus_musculus

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