C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CCCH-type domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373670 RC3H2-001 ENSG00000056586 9606 - 9:122844556-122898110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryENST00000373670
Transcript ID Breast Colon Ovary
ENST00000373670 0.985±0.00 0.511±0.00 0.708±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WK CIL_0006WK_0001 CGP 9:122844556-122913330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IMP protein polyubiquitination
GO:0001782 IEA B cell homeostasis
GO:0003677 IDA DNA binding
GO:0003729 IEA mRNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009791 IEA post-embryonic development
GO:0009986 IDA cell surface
GO:0010468 IEA regulation of gene expression
GO:0010608 IEA posttranscriptional regulation of gene expression
GO:0016020 IDA membrane
GO:0035264 IEA multicellular organism growth
GO:0042098 IEA T cell proliferation
GO:0043029 IEA T cell homeostasis
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048286 IEA lung alveolus development
GO:0048535 IEA lymph node development
GO:0048536 IEA spleen development
GO:0060173 IEA limb development
GO:0061470 IEA T follicular helper cell differentiation
GO:1901224 IEA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100143 Rc3h2-201 protein_coding Mus_musculus 0 6076
ENSMUST00000112936 Rc3h2-003 protein_coding Mus_musculus 0 6074
ENSMUST00000112934 Rc3h2-001 protein_coding Mus_musculus 0 5952
ENSMUST00000125619 Rc3h2-002 processed_transcript Mus_musculus 0 3795
ENSMUST00000124218 Rc3h2-005 processed_transcript Mus_musculus 0 536
ENSMUST00000143826 Rc3h2-004 processed_transcript Mus_musculus 0 418

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