C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger and CCCH-type zinc finger domains 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000075376 Rc3h2 10090 - 2:37370069-37422903 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100143 Rc3h2-201 37370073-37414821 protein_coding
  ENSMUST00000112934 Rc3h2-001 37370069-37422903 protein_coding
  ENSMUST00000112936 Rc3h2-003 37373138-37422869 protein_coding
  ENSMUST00000124218 Rc3h2-005 37409568-37414735 processed_transcript
  ENSMUST00000125619 Rc3h2-002 37373138-37422877 processed_transcript
  ENSMUST00000143826 Rc3h2-004 37377806-37381260 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100143ENSMUST00000112934ENSMUST00000112936ENSMUST00000125619
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100143 2.243±0.52 2.773±0.00 4.647±0.12 6.644±2.89 2.092±1.02 1.629±0.14 1.465±0.37 1.231±0.31 2.002±0.99 3.346±1.00 2.381±0.92 3.526±2.03 3.556±1.69 1.344±0.41
ENSMUST00000112934 1.199±0.00 2.705±0.22 1.178±0.27 1.817±0.78 1.308±0.52 N/A N/A 0.804±0.17 0.665±0.31 1.175±0.00 0.845±0.23 0.804±0.17 1.213±0.37 0.993±0.22
ENSMUST00000112936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.803±0.00
ENSMUST00000125619 1.628±0.00 2.178±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WK CIL_0006WK_0002 CGP 2:37370069-37443171

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0001782 IGI B cell homeostasis
GO:0003677 IEA DNA binding
GO:0003729 IDA mRNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009791 IMP post-embryonic development
GO:0009986 IEA cell surface
GO:0010468 IDA regulation of gene expression
GO:0010608 IDA posttranscriptional regulation of gene expression
GO:0016020 IEA membrane
GO:0035264 IMP multicellular organism growth
GO:0042098 IGI T cell proliferation
GO:0043029 IGI T cell homeostasis
GO:0044822 IEA poly(A) RNA binding
GO:0048286 IMP lung alveolus development
GO:0048535 IGI lymph node development
GO:0048536 IGI spleen development
GO:0060173 IMP limb development
GO:0061470 IGI T follicular helper cell differentiation
GO:1901224 IDA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063050 rc3h2 ring finger and CCCH-type domains 2 protein_coding Danio_rerio
ENSG00000056586 RC3H2 ring finger and CCCH-type domains 2 protein_coding Homo_sapiens

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