C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CCCH-type domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498479 RC3H2-003 ENSG00000056586 9606 - 9:122847555-122905222 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000498479
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000498479 0.939±0.00 2.339±0.00 3.598±0.00 1.753±0.00 0.839±0.00 0.959±0.00 3.235±0.00 3.127±0.00 1.904±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WK CIL_0006WK_0001 CGP 9:122844556-122913330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IMP protein polyubiquitination
GO:0003677 IDA DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125619 Rc3h2-002 processed_transcript Mus_musculus 0 6119
ENSMUST00000100143 Rc3h2-201 protein_coding Mus_musculus 0 3795
ENSMUST00000112936 Rc3h2-003 protein_coding Mus_musculus 0 3795
ENSMUST00000112934 Rc3h2-001 protein_coding Mus_musculus 0 3674
ENSMUST00000124218 Rc3h2-005 processed_transcript Mus_musculus 0 536
ENSMUST00000143826 Rc3h2-004 processed_transcript Mus_musculus 0 418

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