C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NDC1 transmembrane nucleoporin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000058804 NDC1 9606 - 1:53765460-53838860 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371429 NDC1-001 53765460-53838860 protein_coding
  ENST00000480952 NDC1-002 53818970-53838463 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000371429ENST00000480952
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000371429 1.680±0.00 0.287±0.00 0.702±0.00 1.544±1.04 0.705±0.14 1.203±0.64 0.466±0.07 1.327±0.94 1.399±0.00 0.561±0.00 2.483±1.23 1.983±1.07 2.930±1.10
ENST00000480952 N/A N/A 2.430±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0001 VISTA 1:53245555-53849135
CIL_0006WD CIL_0006WD_0002 CGP 1:53506237-53838860

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005643 IDA nuclear pore
GO:0005737 IEA cytoplasm
GO:0007129 IEA synapsis
GO:0007283 IEA spermatogenesis
GO:0015031 NAS protein transport
GO:0016020 IDA membrane
GO:0017056 IMP structural constituent of nuclear pore
GO:0031081 IMP nuclear pore distribution
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021120 ndc1 NDC1 transmembrane nucleoporin protein_coding Danio_rerio
ENSMUSG00000028614 Ndc1 NDC1 transmembrane nucleoporin protein_coding Mus_musculus

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