C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDC1 transmembrane nucleoporin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371429 NDC1-001 ENSG00000058804 9606 - 1:53765460-53838860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000371429
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000371429 1.680±0.00 0.287±0.00 0.702±0.00 1.544±1.04 0.705±0.14 1.203±0.64 0.466±0.07 1.327±0.94 1.399±0.00 0.561±0.00 2.483±1.23 1.983±1.07 2.930±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0001 VISTA 1:53245555-53849135
CIL_0006WD CIL_0006WD_0002 CGP 1:53506237-53838860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IDA nuclear pore
GO:0005737 IEA cytoplasm
GO:0007129 IEA synapsis
GO:0007283 IEA spermatogenesis
GO:0015031 NAS protein transport
GO:0016020 IDA membrane
GO:0017056 IMP structural constituent of nuclear pore
GO:0031081 IMP nuclear pore distribution
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139560 Ndc1-001 protein_coding Mus_musculus 0 3020
ENSMUST00000030357 Ndc1-003 nonsense_mediated_decay Mus_musculus 0 2405
ENSMUST00000149366 Ndc1-002 nonsense_mediated_decay Mus_musculus 0 1583
ENSMUST00000132950 Ndc1-005 retained_intron Mus_musculus 0 643
ENSMUST00000150800 Ndc1-004 processed_transcript Mus_musculus 0 294

Loading