C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NDC1 transmembrane nucleoporin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028614 Ndc1 10090 + 4:107367784-107416346 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030357 Ndc1-003 107367880-107414333 nonsense_mediated_decay
  ENSMUST00000125342 Ndc1-006 107368052-107411150 nonsense_mediated_decay
  ENSMUST00000132950 Ndc1-005 107381462-107390292 retained_intron
  ENSMUST00000139560 Ndc1-001 107367784-107416346 protein_coding
  ENSMUST00000149366 Ndc1-002 107367915-107416323 nonsense_mediated_decay
  ENSMUST00000150800 Ndc1-004 107381085-107386610 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030357ENSMUST00000139560ENSMUST00000149366ENSMUST00000150800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030357 1.958±0.46 N/A N/A 0.491±0.00 3.754±1.54 N/A 1.133±0.00 N/A 2.360±0.24 N/A 0.698±0.06 1.680±0.00 5.612±2.71 1.923±0.50
ENSMUST00000139560 6.128±2.56 2.316±0.56 2.568±0.06 5.545±3.73 4.317±1.69 2.987±0.97 3.703±0.38 3.694±1.08 4.758±3.48 3.009±0.29 1.531±0.35 6.697±4.02 11.019±3.64 4.770±1.09
ENSMUST00000149366 N/A 4.217±0.51 N/A 0.354±0.00 2.361±1.27 2.190±0.49 1.007±0.17 1.244±0.29 1.536±0.56 0.758±0.00 0.461±0.00 4.435±1.93 0.863±0.18 N/A
ENSMUST00000150800 N/A N/A N/A N/A 13.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005643 IDA nuclear pore
GO:0005737 IDA cytoplasm
GO:0007129 IMP synapsis
GO:0007283 IMP spermatogenesis
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017056 IEA structural constituent of nuclear pore
GO:0031081 IEA nuclear pore distribution
GO:0051028 IEA mRNA transport
GO:0051292 IEA nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021120 ndc1 NDC1 transmembrane nucleoporin protein_coding Danio_rerio
ENSG00000058804 NDC1 NDC1 transmembrane nucleoporin protein_coding Homo_sapiens

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