C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glutamyl-tRNA(Gln) amidotransferase, subunit B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000059691 GATB 9606 - 4:151670504-151761023 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263985 GATB-001 151670504-151761023 protein_coding
  ENST00000503160 GATB-005 151670863-151760930 nonsense_mediated_decay
  ENST00000505211 GATB-011 151688737-151716244 retained_intron
  ENST00000507592 GATB-013 151670944-151687083 processed_transcript
  ENST00000508611 GATB-008 151721946-151760990 protein_coding
  ENST00000510396 GATB-007 151670838-151675888 retained_intron
  ENST00000510720 GATB-014 151670888-151701518 nonsense_mediated_decay
  ENST00000511538 GATB-004 151703179-151760970 nonsense_mediated_decay
  ENST00000512306 GATB-003 151703342-151760985 protein_coding
  ENST00000513504 GATB-012 151671136-151691724 processed_transcript
  ENST00000515490 GATB-010 151705230-151717331 retained_intron
  ENST00000515564 GATB-006 151670849-151724480 retained_intron
  ENST00000515812 GATB-002 151670849-151760999 protein_coding
  ENST00000515884 GATB-009 151701396-151760953 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263985ENST00000503160ENST00000505211ENST00000507592ENST00000510396ENST00000510720ENST00000513504ENST00000515490ENST00000515564ENST00000515812ENST00000515884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263985 N/A N/A 0.439±0.00 2.307±0.00 1.020±0.00 0.423±0.00 3.557±0.23 1.083±0.61 2.097±0.00 0.249±0.00 2.552±0.00 1.622±0.63 N/A 1.009±0.00
ENST00000503160 1.845±0.00 3.263±0.00 N/A 5.635±0.00 2.127±0.00 1.082±0.00 3.253±0.00 4.495±0.00 3.824±0.00 1.257±0.00 1.849±0.00 1.740±0.33 2.910±0.72 2.888±0.43
ENST00000505211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.371±0.00 N/A N/A
ENST00000507592 N/A N/A N/A N/A 5.097±0.00 N/A 26.514±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000510396 N/A N/A 0.374±0.00 N/A 0.409±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510720 1.141±0.00 4.423±0.00 N/A 8.537±0.00 5.325±0.00 3.643±0.00 N/A 9.996±0.00 4.219±0.00 N/A 2.846±0.00 N/A N/A 3.840±0.00
ENST00000513504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.877±0.00 7.444±0.00 5.520±0.00
ENST00000515490 N/A N/A N/A N/A N/A N/A N/A 3.530±0.00 N/A N/A N/A N/A N/A N/A
ENST00000515564 N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A
ENST00000515812 1.097±0.00 1.629±0.00 1.157±0.00 3.758±1.39 3.102±0.00 0.943±0.00 5.081±0.00 3.036±0.12 1.721±0.00 0.567±0.00 2.578±1.41 2.037±1.14 5.590±1.55 1.876±0.00
ENST00000515884 N/A N/A N/A N/A N/A N/A N/A N/A 1.672±0.00 N/A 2.883±0.00 N/A 5.879±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OB CIL_0000OB_0002 CGP 4:151409216-151761023

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006412 TAS translation
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008152 IEA metabolic process
GO:0016740 IEA transferase activity
GO:0016874 IEA ligase activity
GO:0016884 IEA carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0030956 IDA glutamyl-tRNA(Gln) amidotransferase complex
GO:0032543 IMP mitochondrial translation
GO:0050567 IDA glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0070681 IDA glutaminyl-tRNAGln biosynthesis via transamidation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037309 pet112 PET112 homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000028085 Pet112 glutamyl-tRNA(Gln) amidotransferase, subunit B protein_coding Mus_musculus

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