C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 40kDa (U5)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000060688 SNRNP40 9606 - 1:31259568-31296782 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263694 SNRNP40-001 31259568-31296770 protein_coding
  ENST00000373720 SNRNP40-002 31259710-31269666 protein_coding
  ENST00000463988 SNRNP40-007 31292844-31296782 processed_transcript
  ENST00000474025 SNRNP40-006 31271208-31289419 processed_transcript
  ENST00000486941 SNRNP40-005 31259673-31261822 processed_transcript
  ENST00000489853 SNRNP40-003 31259674-31282483 processed_transcript
  ENST00000491106 SNRNP40-004 31259786-31261077 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263694ENST00000373720ENST00000474025ENST00000486941ENST00000489853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263694 11.562±0.00 16.308±0.00 1.202±0.00 5.773±0.06 6.809±2.15 7.172±1.32 3.795±1.61 8.188±4.02 6.174±0.32 8.300±0.58 4.750±3.10 22.187±8.31 17.389±3.38 17.830±3.06
ENST00000373720 N/A N/A N/A 1.970±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474025 N/A N/A N/A N/A N/A N/A 2.262±0.00 N/A N/A N/A 1.836±0.00 N/A N/A N/A
ENST00000486941 N/A N/A N/A 2.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489853 N/A N/A N/A 0.893±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005682 TAS U5 snRNP
GO:0005732 NAS small nucleolar ribonucleoprotein complex
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023160 snrnp40 small nuclear ribonucleoprotein 40 (U5) protein_coding Danio_rerio
ENSMUSG00000074088 Snrnp40 small nuclear ribonucleoprotein 40 (U5) protein_coding Mus_musculus

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