C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 40 (U5)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074088 Snrnp40 10090 + 4:130360132-130390026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000105994 Snrnp40-001 130360132-130390026 protein_coding
  ENSMUST00000180577 Snrnp40-002 130360194-130375576 processed_transcript
  ENSMUST00000181161 Snrnp40-004 130362627-130365432 processed_transcript
  ENSMUST00000181560 Snrnp40-003 130385022-130388628 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105994ENSMUST00000180577ENSMUST00000181161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105994 17.235±5.55 12.714±1.40 14.962±2.29 26.038±14.95 13.703±2.05 14.303±2.89 7.993±0.31 11.741±0.29 22.452±19.58 13.026±1.40 6.569±0.32 25.538±3.27 25.058±10.47 15.416±5.64
ENSMUST00000180577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.152±0.56
ENSMUST00000181161 N/A N/A N/A 6.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.894±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A6 CIL_0002A6_0002 CGP 4:130315383-130390026
CIL_0006D8 CIL_0006D8_0002 CGP 4:130360132-130574173

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023160 snrnp40 small nuclear ribonucleoprotein 40 (U5) protein_coding Danio_rerio
ENSG00000060688 SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) protein_coding Homo_sapiens

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