C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 40kDa (U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263694 SNRNP40-001 ENSG00000060688 9606 - 1:31259568-31296770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263694
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263694 11.562±0.00 16.308±0.00 1.202±0.00 5.773±0.06 6.809±2.15 7.172±1.32 3.795±1.61 8.188±4.02 6.174±0.32 8.300±0.58 4.750±3.10 22.187±8.31 17.389±3.38 17.830±3.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005682 TAS U5 snRNP
GO:0005732 NAS small nucleolar ribonucleoprotein complex
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105994 Snrnp40-001 protein_coding Mus_musculus 0 1375
ENSMUST00000180577 Snrnp40-002 processed_transcript Mus_musculus 0 614
ENSMUST00000181161 Snrnp40-004 processed_transcript Mus_musculus 0 267

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