C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 40 (U5)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000023160 snrnp40 7955 + 19:44607303-44619290 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000038230 snrnp40-001 44607303-44619290 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000038230
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000038230 2.468±2.41 4.081±1.85 10.782±0.00 1.162±0.00 1.246±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A6 CIL_0002A6_0001 CGP 19:44599863-44619290
CIL_0006D8 CIL_0006D8_0001 CGP 19:44607303-44634278

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008150 ND biological_process
GO:0019012 IEA virion
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000060688 SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) protein_coding Homo_sapiens
ENSMUSG00000074088 Snrnp40 small nuclear ribonucleoprotein 40 (U5) protein_coding Mus_musculus

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