C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor, suppressor of white-apricot family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000061936 SFSWAP 9606 + 12:131711081-131799737 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261674 SFSWAP-001 131711089-131799737 protein_coding
  ENST00000535202 SFSWAP-011 131726989-131753489 retained_intron
  ENST00000535236 SFSWAP-004 131711100-131778181 retained_intron
  ENST00000535399 SFSWAP-006 131711095-131714495 retained_intron
  ENST00000537164 SFSWAP-008 131753123-131778195 protein_coding
  ENST00000537582 SFSWAP-010 131796118-131799682 retained_intron
  ENST00000538548 SFSWAP-005 131711090-131786597 nonsense_mediated_decay
  ENST00000539506 SFSWAP-009 131783468-131799737 processed_transcript
  ENST00000540469 SFSWAP-007 131711081-131725609 retained_intron
  ENST00000541286 SFSWAP-003 131711137-131799602 protein_coding
  ENST00000542813 SFSWAP-002 131723258-131727034 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261674ENST00000535236ENST00000537164ENST00000538548ENST00000540469ENST00000541286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261674 7.736±0.00 13.257±0.00 N/A 4.936±1.99 1.174±0.00 3.060±0.00 2.186±0.00 1.687±1.36 1.825±0.00 2.870±1.40 2.133±1.82 10.291±4.67 7.610±0.99 8.303±1.62
ENST00000535236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.239±0.00 N/A N/A
ENST00000537164 N/A N/A N/A N/A N/A 7.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538548 N/A N/A N/A N/A N/A N/A 1.166±0.00 2.204±0.00 N/A 1.934±0.00 2.498±1.96 5.486±0.12 2.819±0.00 6.289±0.00
ENST00000540469 N/A N/A 2.193±0.00 2.122±0.00 1.913±0.00 N/A 0.604±0.00 0.646±0.06 1.118±0.00 2.299±0.00 N/A 4.160±0.00 N/A N/A
ENST00000541286 3.957±0.00 4.107±0.00 N/A 7.794±0.00 3.668±0.00 5.191±0.00 1.207±0.00 2.803±0.00 1.091±0.00 6.491±0.00 4.163±0.00 N/A N/A 5.457±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042Y CIL_00042Y_0001 CGP 12:130953907-131799737
CIL_00042X CIL_00042X_0001 CGP 12:131711081-131851783

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006376 TAS mRNA splice site selection
GO:0006396 IEA RNA processing
GO:0006397 TAS mRNA processing
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005980 sfswap splicing factor, suppressor of white-apricot homolog (Drosophila) protein_coding Danio_rerio
ENSMUSG00000029439 Sfswap splicing factor, suppressor of white-apricot homolog (Drosophila) protein_coding Mus_musculus

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