C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor, suppressor of white-apricot family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541286 SFSWAP-003 ENSG00000061936 9606 + 12:131711137-131799602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000541286
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000541286 3.957±0.00 4.107±0.00 7.794±0.00 3.668±0.00 5.191±0.00 1.207±0.00 2.803±0.00 1.091±0.00 6.491±0.00 4.163±0.00 5.457±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042Y CIL_00042Y_0001 CGP 12:130953907-131799737
CIL_00042X CIL_00042X_0001 CGP 12:131711081-131851783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006376 TAS mRNA splice site selection
GO:0006396 IEA RNA processing
GO:0006397 TAS mRNA processing
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053737 Sfswap-201 protein_coding Mus_musculus 0 2364
ENSDART00000143113 sfswap-001 protein_coding Danio_rerio 2e-35 156

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