C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: netrin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065320 NTN1 9606 + 17:9021542-9244000 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000173229 NTN1-001 9021542-9244000 protein_coding
  ENST00000436734 NTN1-002 9162935-9183676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000173229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000173229 4.486±0.00 6.744±0.00 0.211±0.00 0.992±0.76 1.670±0.85 5.435±5.07 5.594±5.21 1.091±0.42 4.036±3.11 4.192±3.71 0.663±0.39 1.701±0.98 0.881±0.30 2.003±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LK CIL_0001LK_0002 CGP 17:8878911-9244000
CIL_0001LN CIL_0001LN_0002 CGP 17:9021542-9576591

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005604 IEA basement membrane
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0007409 IEA axonogenesis
GO:0007411 TAS axon guidance
GO:0008284 IEA positive regulation of cell proliferation
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030334 IEA regulation of cell migration
GO:0030517 IEA negative regulation of axon extension
GO:0030879 IEA mammary gland development
GO:0033564 IEA anterior/posterior axon guidance
GO:0040023 IEA establishment of nucleus localization
GO:0042472 IEA inner ear morphogenesis
GO:0045773 IEA positive regulation of axon extension
GO:0060603 IEA mammary gland duct morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022531 ntn1b netrin 1b protein_coding Danio_rerio
ENSDARG00000033733 ntn1a netrin 1a protein_coding Danio_rerio
ENSMUSG00000020902 Ntn1 netrin 1 protein_coding Mus_musculus

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