C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: netrin 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000033733 ntn1a 7955 + 6:17998946-18121555 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000027806 ntn1a-201 17998946-18117995 protein_coding
  ENSDART00000148565 ntn1a-001 17998946-18121555 protein_coding
  ENSDART00000149651 ntn1a-002 17998946-18079624 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000027806ENSDART00000148565ENSDART00000149651
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000027806 0.964±0.00 N/A N/A N/A N/A
ENSDART00000148565 1.418±0.11 1.872±0.68 0.363±0.10 0.152±0.00 0.332±0.00
ENSDART00000149651 N/A N/A N/A 0.187±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LK CIL_0001LK_0001 CGP 6:17947614-18121555
CIL_0001LN CIL_0001LN_0001 CGP 6:17998946-18236139

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0001569 IMP patterning of blood vessels
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0016358 IGI dendrite development
GO:0016525 IMP negative regulation of angiogenesis
GO:0030516 IGI regulation of axon extension
GO:0033564 IMP anterior/posterior axon guidance
GO:0048665 IMP neuron fate specification
GO:0071678 IMP olfactory bulb axon guidance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000065320 NTN1 netrin 1 protein_coding Homo_sapiens
ENSMUSG00000020902 Ntn1 netrin 1 protein_coding Mus_musculus

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