C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001LK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079451-ENSDARG00000033733 CGP 7955 6:17947614-18121555
GeneTranscriptPositionBiotype
ENSDARG00000033733 (ntn1a)
netrin 1a 		ENSDART00000027806 (ntn1a-201) 17998946-18117995 protein_coding
ENSDART00000148565 (ntn1a-001) 17998946-18121555 protein_coding
ENSDART00000149651 (ntn1a-002) 17998946-18079624 protein_coding
ENSDARG00000079451 (pik3r5)
phosphoinositide-3-kinase, regulatory subunit 5 		ENSDART00000108920 (pik3r5-201) 17947614-17975407 protein_coding
ENSDART00000126371 (pik3r5-202) 17947614-17975407 protein_coding
ENSDART00000151711 (pik3r5-001) 17947614-17991840 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001LK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141506-ENSG00000065320 CGP 9606 17:8878911-9244000
GeneTranscriptPositionBiotype
ENSG00000065320 (NTN1)
netrin 1 		ENST00000173229 (NTN1-001) 9021542-9244000 protein_coding
ENST00000436734 (NTN1-002) 9162935-9183676 protein_coding
ENSG00000141506 (PIK3R5)
phosphoinositide-3-kinase, regulatory subunit 5 		ENST00000269300 (PIK3R5-002) 8878911-8965703 nonsense_mediated_decay
ENST00000447110 (PIK3R5-201) 8878917-8965712 protein_coding
ENST00000577214 (PIK3R5-013) 8880651-8887270 retained_intron
ENST00000577981 (PIK3R5-007) 8890819-8965712 processed_transcript
ENST00000578457 (PIK3R5-005) 8888741-8911512 processed_transcript
ENST00000578515 (PIK3R5-003) 8880639-8965707 retained_intron
ENST00000578743 (PIK3R5-011) 8880641-8885086 processed_transcript
ENST00000580959 (PIK3R5-006) 8888741-8965615 processed_transcript
ENST00000581552 (PIK3R5-001) 8880096-8912517 protein_coding
ENST00000581895 (PIK3R5-015) 8909144-8911988 protein_coding
ENST00000583039 (PIK3R5-010) 8887427-8888513 retained_intron
ENST00000583222 (PIK3R5-016) 8915700-8965707 processed_transcript
ENST00000583810 (PIK3R5-012) 8880578-8882508 retained_intron
ENST00000583812 (PIK3R5-009) 8888823-8893650 processed_transcript
ENST00000584456 (PIK3R5-008) 8888638-8893908 processed_transcript
ENST00000584803 (PIK3R5-004) 8880639-8911507 protein_coding
ENST00000585260 (PIK3R5-014) 8880464-8881869 protein_coding
ENST00000611902 (PIK3R5-202) 8878919-8965712 protein_coding
ENST00000616147 (PIK3R5-203) 8878919-8965712 protein_coding
ENST00000623421 (PIK3R5-204) 8878919-8965712 protein_coding
ENSG00000262966 (RP11-85B7.2)
 ENST00000574307 (RP11-85B7.2-001) 9171068-9179118 antisense
ENSG00000265975 (CTB-41I6.2)
 ENST00000578788 (CTB-41I6.2-001) 8967523-8976995 lincRNA
ENSG00000266389 (CTB-41I6.1)
 ENST00000585297 (CTB-41I6.1-001) 8965896-8967070 lincRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LK_0001ENSDARG00000033733ENSDART00000027806ENSDART00000148565ENSDART00000149651ENSDARG00000079451ENSDART00000108920ENSDART00000126371ENSDART00000151711CIL_0001LK_0002ENSG00000065320ENST00000173229ENST00000436734ENSG00000141506ENST00000269300ENST00000447110ENST00000577214ENST00000577981ENST00000578457ENST00000578515ENST00000578743ENST00000580959ENST00000581552ENST00000581895ENST00000583039ENST00000583222ENST00000583810ENST00000583812ENST00000584456ENST00000584803ENST00000585260ENST00000611902ENST00000616147ENST00000623421ENSG00000262966ENST00000574307ENSG00000265975ENST00000578788ENSG00000266389ENST00000585297
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LK_0001ENSDARG00000033733ENSDART00000027806ENSDART00000148565ENSDART00000149651ENSDARG00000079451ENSDART00000108920ENSDART00000126371ENSDART00000151711CIL_0001LK_0002ENSG00000065320ENST00000173229ENSG00000141506ENST00000269300ENST00000447110ENST00000577214ENST00000581895ENST00000583039ENST00000583222ENST00000584803ENST00000611902ENST00000616147ENST00000623421ENSG00000262966ENST00000574307ENSG00000265975ENST00000578788ENSG00000266389ENST00000585297
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000033733 ENSDART00000027806 N/A N/A N/A 0.964±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148565 N/A N/A N/A 1.418±0.11 N/A N/A 1.872±0.68 0.363±0.10 0.152±0.00 N/A 0.332±0.00 N/A N/A N/A
ENSDART00000149651 N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A N/A N/A
ENSDARG00000079451 ENSDART00000108920 N/A N/A N/A 0.255±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000126371 N/A N/A N/A 0.174±0.05 N/A N/A 0.104±0.00 0.108±0.00 0.096±0.00 N/A N/A N/A N/A N/A
ENSDART00000151711 N/A N/A N/A N/A N/A N/A 0.724±0.00 1.557±0.48 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065320 ENST00000173229 4.486±0.00 6.744±0.00 0.211±0.00 0.992±0.76 1.670±0.85 5.435±5.07 5.594±5.21 1.091±0.42 4.036±3.11 4.192±3.71 0.663±0.39 1.701±0.98 0.881±0.30 2.003±1.43
ENST00000436734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141506 ENST00000269300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.190±0.00
ENST00000447110 N/A N/A N/A 0.135±0.00 0.819±0.00 N/A N/A N/A 0.316±0.00 1.080±0.31 N/A 0.281±0.00 1.027±0.33 N/A
ENST00000577214 N/A N/A N/A N/A N/A N/A 0.230±0.00 N/A 1.264±0.00 N/A 0.073±0.00 1.544±0.00 N/A N/A
ENST00000577981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581895 N/A N/A 0.930±0.00 N/A N/A 1.435±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583039 N/A N/A N/A 0.767±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583222 N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000583810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584803 N/A N/A N/A N/A 0.758±0.00 N/A N/A N/A 0.392±0.00 1.049±0.00 N/A N/A N/A N/A
ENST00000585260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611902 N/A 1.447±0.00 0.057±0.00 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A 0.386±0.00
ENST00000616147 N/A 1.507±0.00 N/A N/A 0.265±0.00 0.328±0.00 0.232±0.00 N/A N/A N/A N/A 0.212±0.00 N/A N/A
ENST00000623421 1.077±0.00 2.526±0.00 N/A 0.100±0.00 0.189±0.00 0.166±0.00 N/A N/A N/A N/A 0.085±0.00 N/A N/A 0.383±0.15
ENSG00000262966 ENST00000574307 N/A 0.033±0.00 0.009±0.00 0.207±0.00 0.016±0.01 0.047±0.01 0.017±0.01 0.008±0.00 0.031±0.01 0.047±0.02 N/A 0.039±0.02 0.012±0.00 0.048±0.01
ENSG00000265975 ENST00000578788 0.076±0.00 0.389±0.00 N/A N/A 0.282±0.00 0.291±0.20 0.118±0.00 0.051±0.00 0.207±0.04 N/A N/A 0.073±0.00 0.344±0.20 0.794±0.00
ENSG00000266389 ENST00000585297 N/A 0.300±0.00 N/A N/A N/A N/A N/A 0.103±0.00 0.045±0.00 N/A N/A 0.312±0.20 0.461±0.00 0.530±0.12

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