C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rogdi homolog (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000067836 ROGDI 9606 - 16:4796968-4802950 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322048 ROGDI-001 4796968-4802950 protein_coding
  ENST00000585653 ROGDI-013 4798504-4802630 retained_intron
  ENST00000585871 ROGDI-007 4801029-4802880 retained_intron
  ENST00000586153 ROGDI-016 4797721-4800578 protein_coding
  ENST00000586336 ROGDI-008 4797742-4802184 processed_transcript
  ENST00000586504 ROGDI-009 4797403-4801301 protein_coding
  ENST00000587377 ROGDI-003 4796987-4802615 nonsense_mediated_decay
  ENST00000587711 ROGDI-014 4797707-4802627 protein_coding
  ENST00000587843 ROGDI-002 4796969-4802633 nonsense_mediated_decay
  ENST00000588201 ROGDI-005 4797247-4802673 nonsense_mediated_decay
  ENST00000589543 ROGDI-011 4797780-4801659 retained_intron
  ENST00000590198 ROGDI-012 4801333-4802665 retained_intron
  ENST00000591292 ROGDI-006 4796969-4802162 retained_intron
  ENST00000591392 ROGDI-015 4797703-4802621 protein_coding
  ENST00000592019 ROGDI-010 4797309-4800552 protein_coding
  ENST00000592112 ROGDI-004 4801816-4802856 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322048ENST00000586504ENST00000587377ENST00000587843ENST00000589543ENST00000591292ENST00000591392ENST00000592019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322048 N/A N/A N/A N/A 0.992±0.00 0.830±0.00 4.583±0.00 1.084±0.00 N/A 4.786±0.00 1.876±0.00 4.146±0.10 3.710±0.48 1.976±0.00
ENST00000586504 N/A N/A 0.924±0.00 N/A N/A N/A N/A N/A 1.644±0.00 1.074±0.00 3.151±0.00 N/A N/A N/A
ENST00000587377 N/A N/A 1.186±0.00 17.466±7.31 1.656±0.00 7.813±0.00 5.311±3.16 9.205±0.00 2.074±0.75 1.117±0.00 3.999±2.44 7.143±4.60 7.118±1.43 4.955±0.61
ENST00000587843 1.929±0.00 2.384±0.00 N/A 24.973±15.56 1.986±0.00 5.659±0.00 3.822±2.99 3.508±0.00 5.549±0.00 4.320±3.40 2.258±0.00 3.644±1.02 5.694±0.26 4.115±0.00
ENST00000589543 2.333±0.00 3.190±0.00 N/A N/A 1.779±0.89 N/A N/A N/A N/A N/A N/A 7.253±1.36 8.323±0.00 4.758±0.00
ENST00000591292 N/A 0.863±0.00 N/A N/A 0.394±0.09 N/A 0.547±0.00 1.600±0.00 N/A N/A N/A 1.372±0.53 N/A 0.978±0.00
ENST00000591392 N/A 5.474±0.00 1.300±0.00 N/A 3.765±0.00 10.180±0.00 8.268±0.00 5.865±0.00 N/A N/A 2.755±0.00 N/A N/A 5.365±0.00
ENST00000592019 N/A N/A N/A N/A N/A N/A N/A N/A 4.537±0.00 N/A N/A 7.359±0.00 9.873±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004V CIL_00004V_0001 CGP 16:4788397-4802950
CIL_0001G7 CIL_0001G7_0001 CGP 16:4796968-4847342

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0008284 IEA positive regulation of cell proliferation
GO:0030097 IEA hemopoiesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000096253 rogdi rogdi homolog (Drosophila) protein_coding Danio_rerio
ENSMUSG00000022540 Rogdi rogdi homolog (Drosophila) protein_coding Mus_musculus

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