C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 35 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000069329 VPS35 9606 - 16:46656132-46689518 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299138 VPS35-001 46656132-46689192 protein_coding
  ENST00000561713 VPS35-005 46681379-46689194 nonsense_mediated_decay
  ENST00000562420 VPS35-011 46661827-46669214 retained_intron
  ENST00000563884 VPS35-006 46680675-46681956 retained_intron
  ENST00000563984 VPS35-004 46682882-46689180 retained_intron
  ENST00000565228 VPS35-010 46676578-46677686 retained_intron
  ENST00000568191 VPS35-007 46681756-46683607 retained_intron
  ENST00000568612 VPS35-008 46680687-46689151 nonsense_mediated_decay
  ENST00000568642 VPS35-012 46672418-46679043 processed_transcript
  ENST00000568784 VPS35-002 46659677-46689147 nonsense_mediated_decay
  ENST00000569950 VPS35-003 46676505-46689518 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299138ENST00000568784ENST00000569950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299138 3.039±0.00 2.431±0.00 N/A 2.778±1.25 3.198±0.00 1.849±0.78 1.592±0.58 2.639±0.00 1.429±0.00 2.427±0.40 2.123±0.00 2.717±0.96 1.886±0.20 3.664±0.00
ENST00000568784 13.814±0.00 9.109±0.00 5.179±0.00 17.643±4.07 12.103±3.47 14.698±7.29 2.999±0.19 13.508±7.86 5.722±1.63 8.476±2.70 6.172±2.88 15.148±4.37 16.587±2.09 24.862±2.60
ENST00000569950 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.300±0.00 N/A 19.366±0.00 21.664±0.00 29.940±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VM CIL_0002VM_0001 CGP 16:46656132-46698394

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005765 IDA lysosomal membrane
GO:0005768 IDA endosome
GO:0005829 IDA cytosol
GO:0008219 IEA cell death
GO:0015031 IEA protein transport
GO:0030904 IEA retromer complex
GO:0042147 NAS:IEA retrograde transport, endosome to Golgi
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008224 vps35 vacuolar protein sorting 35 (yeast) protein_coding Danio_rerio
ENSMUSG00000031696 Vps35 vacuolar protein sorting 35 protein_coding Mus_musculus

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