C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002VM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000069329-ENSG00000091651 CGP 9606 16:46656132-46698394
GeneTranscriptPositionBiotype
ENSG00000069329 (VPS35)
vacuolar protein sorting 35 homolog (S. cerevisiae) 		ENST00000299138 (VPS35-001) 46656132-46689192 protein_coding
ENST00000561713 (VPS35-005) 46681379-46689194 nonsense_mediated_decay
ENST00000562420 (VPS35-011) 46661827-46669214 retained_intron
ENST00000563884 (VPS35-006) 46680675-46681956 retained_intron
ENST00000563984 (VPS35-004) 46682882-46689180 retained_intron
ENST00000565228 (VPS35-010) 46676578-46677686 retained_intron
ENST00000568191 (VPS35-007) 46681756-46683607 retained_intron
ENST00000568612 (VPS35-008) 46680687-46689151 nonsense_mediated_decay
ENST00000568642 (VPS35-012) 46672418-46679043 processed_transcript
ENST00000568784 (VPS35-002) 46659677-46689147 nonsense_mediated_decay
ENST00000569950 (VPS35-003) 46676505-46689518 retained_intron
ENSG00000091651 (ORC6)
origin recognition complex, subunit 6 		ENST00000219097 (ORC6-001) 46689646-46698394 protein_coding
ENST00000563306 (ORC6-003) 46689682-46696219 retained_intron
ENST00000563599 (ORC6-004) 46689643-46697511 nonsense_mediated_decay
ENST00000566860 (ORC6-005) 46690786-46698385 protein_coding
ENST00000567000 (ORC6-007) 46695109-46698382 retained_intron
ENST00000568364 (ORC6-006) 46689697-46697818 protein_coding
ENST00000569239 (ORC6-002) 46689659-46694519 retained_intron
ENST00000570260 (ORC6-008) 46689707-46695051 processed_transcript
ENST00000575571 (ORC6-009) 46694937-46697898 processed_transcript
ENSG00000261131 (RP11-93O14.2)
 ENST00000569353 (RP11-93O14.2-001) 46660696-46661591 sense_intronic
ENSG00000280376 (RP11-93O14.3)
 ENST00000623850 (RP11-93O14.3-001) 46673443-46673927 TEC
CIL_0002VM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031696-ENSMUSG00000031697 CGP 10090 8:85260397-85308278
GeneTranscriptPositionBiotype
ENSMUSG00000031696 (Vps35)
vacuolar protein sorting 35 		ENSMUST00000034131 (Vps35-201) 85260397-85299513 protein_coding
ENSMUSG00000031697 (Orc6)
origin recognition complex, subunit 6 		ENSMUST00000034132 (Orc6-201) 85299632-85308278 protein_coding
ENSMUST00000170141 (Orc6-202) 85299632-85308278 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VM_0001ENSG00000069329ENST00000299138ENST00000561713ENST00000562420ENST00000563884ENST00000563984ENST00000565228ENST00000568191ENST00000568612ENST00000568642ENST00000568784ENST00000569950ENSG00000091651ENST00000219097ENST00000563306ENST00000563599ENST00000566860ENST00000567000ENST00000568364ENST00000569239ENST00000570260ENST00000575571ENSG00000261131ENST00000569353ENSG00000280376ENST00000623850CIL_0002VM_0002ENSMUSG00000031696ENSMUST00000034131ENSMUSG00000031697ENSMUST00000034132ENSMUST00000170141
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VM_0001ENSG00000069329ENST00000299138ENST00000568784ENST00000569950ENSG00000091651ENST00000219097ENST00000563306ENST00000567000ENST00000568364ENST00000569239ENST00000575571ENSG00000261131ENST00000569353ENSG00000280376ENST00000623850CIL_0002VM_0002ENSMUSG00000031696ENSMUST00000034131ENSMUSG00000031697ENSMUST00000034132ENSMUST00000170141
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000069329 ENST00000299138 3.039±0.00 2.431±0.00 N/A 2.778±1.25 3.198±0.00 1.849±0.78 1.592±0.58 2.639±0.00 1.429±0.00 2.427±0.40 2.123±0.00 2.717±0.96 1.886±0.20 3.664±0.00
ENST00000561713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568784 13.814±0.00 9.109±0.00 5.179±0.00 17.643±4.07 12.103±3.47 14.698±7.29 2.999±0.19 13.508±7.86 5.722±1.63 8.476±2.70 6.172±2.88 15.148±4.37 16.587±2.09 24.862±2.60
ENST00000569950 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.300±0.00 N/A 19.366±0.00 21.664±0.00 29.940±0.00
ENSG00000091651 ENST00000219097 0.247±0.00 0.245±0.00 N/A 0.583±0.21 0.315±0.00 0.224±0.00 0.239±0.11 N/A N/A 0.405±0.00 N/A 3.046±3.34 1.573±0.91 4.856±2.24
ENST00000563306 N/A N/A N/A N/A N/A 0.797±0.00 N/A N/A 0.092±0.00 N/A 0.073±0.00 0.766±0.64 N/A N/A
ENST00000563599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567000 0.089±0.00 0.326±0.00 N/A 0.770±0.00 0.954±0.00 0.266±0.00 N/A 0.092±0.00 0.158±0.00 N/A N/A 2.439±2.84 N/A 4.971±3.98
ENST00000568364 N/A 0.368±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.272±0.00
ENST00000569239 0.091±0.00 0.234±0.00 1.861±0.00 1.328±0.00 1.682±1.63 0.538±0.51 1.166±0.00 0.506±0.43 0.772±0.72 1.725±0.00 1.108±1.08 1.225±0.87 0.409±0.17 N/A
ENST00000570260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575571 N/A N/A N/A N/A N/A N/A 0.281±0.00 N/A N/A 0.550±0.00 0.052±0.00 N/A N/A N/A
ENSG00000261131 ENST00000569353 0.186±0.00 0.483±0.00 0.955±0.00 0.431±0.00 0.094±0.00 N/A 0.166±0.00 0.097±0.00 N/A 0.106±0.00 0.250±0.00 0.430±0.16 N/A 0.372±0.05
ENSG00000280376 ENST00000623850 0.027±0.00 0.052±0.00 N/A 0.102±0.02 0.181±0.11 0.140±0.12 0.024±0.00 0.025±0.00 N/A N/A N/A 0.217±0.00 N/A 0.185±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031696 ENSMUST00000034131 24.580±0.91 9.446±0.98 42.594±3.76 34.518±3.40 16.136±2.76 10.857±0.92 14.242±0.90 24.166±1.85 22.266±11.82 18.137±1.28 18.060±1.14 14.687±9.97 59.150±17.30 17.679±2.02
ENSMUSG00000031697 ENSMUST00000034132 5.642±1.39 2.207±0.32 7.753±1.44 10.704±4.84 3.921±0.61 2.419±1.13 1.230±0.53 2.978±0.47 17.809±19.23 4.746±0.61 1.353±0.30 5.924±1.52 27.001±11.30 5.240±1.44
ENSMUST00000170141 N/A N/A N/A 2.785±0.76 3.587±0.00 N/A 0.520±0.00 0.446±0.00 5.894±0.42 N/A 0.473±0.26 2.873±0.37 5.227±0.71 1.143±0.36

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