C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 2, member D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000069493 CLEC2D 9606 + 12:9664969-9699555 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261339 CLEC2D-015 9669735-9694874 protein_coding
  ENST00000261340 CLEC2D-005 9669713-9695129 protein_coding
  ENST00000290855 CLEC2D-001 9669713-9699555 protein_coding
  ENST00000325960 CLEC2D-002 9669713-9695138 nonsense_mediated_decay
  ENST00000430909 CLEC2D-014 9680925-9695129 protein_coding
  ENST00000444971 CLEC2D-017 9669717-9695817 nonsense_mediated_decay
  ENST00000460309 CLEC2D-008 9687901-9695106 protein_coding
  ENST00000466035 CLEC2D-006 9669753-9693479 protein_coding
  ENST00000476198 CLEC2D-012 9674008-9693336 nonsense_mediated_decay
  ENST00000479877 CLEC2D-004 9669728-9695129 nonsense_mediated_decay
  ENST00000487752 CLEC2D-010 9668637-9681050 processed_transcript
  ENST00000492359 CLEC2D-009 9669717-9692931 nonsense_mediated_decay
  ENST00000536355 CLEC2D-011 9664969-9692883 nonsense_mediated_decay
  ENST00000543300 CLEC2D-018 9669735-9694801 protein_coding
  ENST00000544322 CLEC2D-013 9680940-9694869 protein_coding
  ENST00000545918 CLEC2D-016 9669735-9694801 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261340ENST00000290855ENST00000325960ENST00000444971ENST00000460309ENST00000466035ENST00000479877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261340 0.444±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000290855 0.307±0.00 N/A N/A 0.287±0.04 0.654±0.00 0.236±0.00 0.167±0.00 0.437±0.00 0.186±0.00 1.989±1.18 0.068±0.00 0.553±0.00 0.451±0.28 0.848±0.22
ENST00000325960 N/A N/A N/A N/A N/A N/A 0.156±0.00 0.356±0.00 N/A N/A N/A N/A N/A N/A
ENST00000444971 0.394±0.00 N/A 0.995±0.00 N/A 2.092±0.00 2.104±0.00 0.419±0.00 0.331±0.00 N/A N/A N/A 1.772±0.00 0.548±0.15 1.515±0.00
ENST00000460309 N/A N/A N/A N/A N/A 0.591±0.00 N/A 0.767±0.00 N/A 1.844±0.00 N/A N/A N/A N/A
ENST00000466035 N/A N/A N/A N/A 4.302±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479877 0.365±0.00 4.464±0.00 0.368±0.00 0.116±0.00 0.488±0.00 1.955±0.00 0.225±0.00 N/A N/A 1.361±0.00 N/A 2.117±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TA CIL_0000TA_0001 CGP 12:9594551-9699555

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004888 TAS transmembrane signaling receptor activity
GO:0005783 IDA endoplasmic reticulum
GO:0005887 TAS integral component of plasma membrane
GO:0007166 TAS cell surface receptor signaling pathway
GO:0009986 IDA cell surface
GO:0016020 TAS membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000000248 Clec2g C-type lectin domain family 2, member g protein_coding Mus_musculus
ENSMUSG00000030155 Clec2e C-type lectin domain family 2, member e protein_coding Mus_musculus
ENSMUSG00000030157 Clec2d C-type lectin domain family 2, member d protein_coding Mus_musculus
ENSMUSG00000030363 Clec2j C-type lectin domain family 2, member J protein_coding Mus_musculus
ENSMUSG00000030364 Clec2h C-type lectin domain family 2, member h protein_coding Mus_musculus
ENSMUSG00000030365 Clec2i C-type lectin domain family 2, member i protein_coding Mus_musculus

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