C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 2, member D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290855 CLEC2D-001 ENSG00000069493 9606 + 12:9669713-9699555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290855
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290855 0.307±0.00 0.287±0.04 0.654±0.00 0.236±0.00 0.167±0.00 0.437±0.00 0.186±0.00 1.989±1.18 0.068±0.00 0.553±0.00 0.451±0.28 0.848±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TA CIL_0000TA_0001 CGP 12:9594551-9699555

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004888 TAS transmembrane signaling receptor activity
GO:0005783 IDA endoplasmic reticulum
GO:0005887 TAS integral component of plasma membrane
GO:0007166 TAS cell surface receptor signaling pathway
GO:0009986 IDA cell surface
GO:0016020 TAS membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 1297
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 806
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 802
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 778
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 776
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 680
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 0 523
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 239

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