C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD and ring finger domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070047 PHRF1 9606 + 11:576486-612222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264555 PHRF1-001 576486-612222 protein_coding
  ENST00000413872 PHRF1-007 576521-611964 protein_coding
  ENST00000416188 PHRF1-008 576521-611964 protein_coding
  ENST00000532550 PHRF1-005 601657-606842 retained_intron
  ENST00000533464 PHRF1-003 576521-611964 protein_coding
  ENST00000534320 PHRF1-004 576486-612043 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264555ENST00000413872ENST00000416188ENST00000533464ENST00000534320
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264555 1.998±0.00 N/A 0.621±0.35 0.348±0.00 0.726±0.00 N/A 1.125±0.15 N/A N/A 3.924±0.00 5.308±3.46 3.390±1.58 N/A
ENST00000413872 N/A 4.146±0.00 N/A 1.639±0.00 0.748±0.00 1.861±0.00 N/A N/A 5.089±0.00 2.117±0.00 2.362±0.00 2.819±0.49 N/A
ENST00000416188 N/A N/A 0.749±0.00 N/A 1.979±0.00 1.358±0.00 1.356±0.00 N/A 1.321±0.21 3.092±0.00 1.707±0.00 4.450±0.00 2.707±0.00
ENST00000533464 6.952±0.00 2.917±0.00 4.403±0.00 4.723±0.00 3.208±0.00 N/A 4.661±0.00 5.363±0.00 N/A 1.036±0.92 4.899±1.15 2.029±0.59 6.624±2.08
ENST00000534320 N/A 4.828±0.00 N/A 2.333±0.00 1.760±0.00 1.204±1.12 1.474±0.00 1.768±0.00 N/A 1.959±0.00 8.732±0.00 4.725±0.00 5.844±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S8 CIL_0006S8_0002 CGP 11:560404-612222
CIL_0006RQ CIL_0006RQ_0002 CGP 11:576486-615999

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0019904 IEA protein domain specific binding
GO:0046872 IEA metal ion binding
GO:0070063 ISS RNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075252 phrf1 PHD and ring finger domains 1 protein_coding Danio_rerio
ENSMUSG00000038611 Phrf1 PHD and ring finger domains 1 protein_coding Mus_musculus

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