C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD and ring finger domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534320 PHRF1-004 ENSG00000070047 9606 + 11:576486-612043 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000534320
Transcript ID Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000534320 4.828±0.00 2.333±0.00 1.760±0.00 1.204±1.12 1.474±0.00 1.768±0.00 1.959±0.00 8.732±0.00 4.725±0.00 5.844±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S8 CIL_0006S8_0002 CGP 11:560404-612222
CIL_0006RQ CIL_0006RQ_0002 CGP 11:576486-615999

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0046872 IEA metal ion binding
GO:0070063 ISS RNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106027 Phrf1-001 protein_coding Mus_musculus 0 1251
ENSMUST00000134057 Phrf1-004 protein_coding Mus_musculus 0 496
ENSMUST00000155123 Phrf1-010 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000130687 Phrf1-007 protein_coding Mus_musculus 0 374
ENSMUST00000142572 Phrf1-003 protein_coding Mus_musculus 0 374
ENSMUST00000122143 Phrf1-009 protein_coding Mus_musculus 0 374
ENSMUST00000144250 Phrf1-008 processed_transcript Mus_musculus 0 342
ENSMUST00000130852 Phrf1-006 processed_transcript Mus_musculus 5e-37 161

Loading