C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD and ring finger domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038611 Phrf1 10090 + 7:141228784-141262750 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000106027 Phrf1-001 141228789-141262626 protein_coding
  ENSMUST00000122143 Phrf1-009 141243499-141262595 protein_coding
  ENSMUST00000122868 Phrf1-002 141256003-141257829 retained_intron
  ENSMUST00000130687 Phrf1-007 141260397-141262747 protein_coding
  ENSMUST00000130852 Phrf1-006 141259658-141260587 processed_transcript
  ENSMUST00000132540 Phrf1-005 141254914-141258069 processed_transcript
  ENSMUST00000134057 Phrf1-004 141234201-141247317 protein_coding
  ENSMUST00000142572 Phrf1-003 141259190-141262750 protein_coding
  ENSMUST00000144250 Phrf1-008 141261679-141262700 processed_transcript
  ENSMUST00000144632 Phrf1-011 141256004-141256886 retained_intron
  ENSMUST00000155123 Phrf1-010 141228784-141262742 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106027ENSMUST00000122143ENSMUST00000130687ENSMUST00000142572ENSMUST00000155123
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106027 5.517±2.72 8.962±1.34 3.777±1.58 9.303±5.54 4.624±2.04 7.310±0.73 2.124±0.33 4.080±0.48 4.597±2.08 5.362±0.74 2.188±0.89 8.084±7.07 16.855±8.34 6.744±6.64
ENSMUST00000122143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.579±0.00 4.010±0.00 N/A N/A
ENSMUST00000130687 N/A N/A N/A 2.842±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 51.565±0.52 N/A
ENSMUST00000142572 N/A N/A N/A 3.578±1.91 N/A N/A N/A N/A N/A N/A 1.986±0.34 11.042±0.00 16.965±0.00 15.686±0.00
ENSMUST00000155123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.316±0.11 6.913±0.70 8.772±2.17 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S8 CIL_0006S8_0003 CGP 7:141215860-141262750
CIL_0006RQ CIL_0006RQ_0003 CGP 7:141228784-141266481

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0019904 IEA protein domain specific binding
GO:0035556 IEA intracellular signal transduction
GO:0070063 ISS RNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075252 phrf1 PHD and ring finger domains 1 protein_coding Danio_rerio
ENSG00000070047 PHRF1 PHD and ring finger domains 1 protein_coding Homo_sapiens

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