C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, erythrocytic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389721 SPTB-004 ENSG00000070182 9606 - 14:64766399-64823127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungMusclePlacentaENST00000389721
Transcript ID Heart Lung Muscle Placenta
ENST00000389721 1.286±0.00 0.961±0.00 17.392±0.00 3.641±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010L CIL_00010L_0001 CGP 14:64704102-64879883

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS:IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007411 TAS axon guidance
GO:0008091 IEA spectrin
GO:0009986 IDA cell surface
GO:0014731 IDA spectrin-associated cytoskeleton
GO:0015629 TAS actin cytoskeleton
GO:0030506 IPI ankyrin binding
GO:0031235 TAS intrinsic component of the cytoplasmic side of the plasma membrane
GO:0043234 IDA protein complex
GO:0051015 IDA actin filament binding
GO:0051693 IEA actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166101 Sptb-002 protein_coding Mus_musculus 0 7348
ENSMUST00000021458 Sptb-001 protein_coding Mus_musculus 0 7278
ENSDART00000098492 protein_coding Danio_rerio 0 804

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